Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5123 129 4e-25 seq1295 129 4e-25 seq5124 122 6e-23 >seq5123 Length=25762168 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || ||||| || | || Sbjct 6598739 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCATCG 6598680 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | | || || || || | || |||||||| Sbjct 6598679 GACACTATTGAGAATGTGAAGGCTAAGA-TCCAAGATAAGGAGGGAATCCCTCCAGATCA 6598621 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| || ||||||||| Sbjct 6598620 GCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAA 6598561 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | || || ||| | | |||| ||||| Sbjct 6598560 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGAGG 6598513 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| |||||||| || | || Sbjct 6599195 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 6599136 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | | || || || || | || |||||||| Sbjct 6599135 GACACTATTGAGAATGTGAAGGCTAAGA-TCCAAGATAAGGAGGGAATCCCTCCAGATCA 6599077 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| | ||||||||| Sbjct 6599076 GCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 6599017 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 6599016 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 6598986 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || || ||||| || ||||| || | || Sbjct 6600335 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCATCG 6600276 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | |||| | || || || || | || |||||||| Sbjct 6600275 GACACTATTGAGAATGTGAAGGCCAAAA-TCCAAGATAAGGAGGGAATCCCTCCAGATCA 6600217 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| || ||||||||| Sbjct 6600216 GCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAA 6600157 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 6600156 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 6600126 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || || ||||| |||||||| || | || Sbjct 6598511 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 6598452 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 6598451 GACACTATTGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGAATCCCCCCAGATCA 6598393 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||| || || || | |||||| || ||||||||| Sbjct 6598392 GCAGCGTCTGATTTTCGCCGGCAAACAGCTCGAGGATGGACGCACCTTGTCCGATTACAA 6598333 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || |||||||| || || || || Sbjct 6598332 CATCCAGAAGGAGTCCACTTTGCACTTGGT 6598303 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || ||||| || |||||| | || || || || || Sbjct 6600107 ATGCAGATCTTCGTGAAGACCTTGACTGGAAAGACAATCACTTTGGAGGTGGAGCCCTCG 6600048 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | || || || || || | || |||||||| Sbjct 6600047 GATACCATCGAGAATGTGAAGGCCAAGA-TTCAGGATAAGGAGGGAATTCCTCCAGATCA 6599989 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || |||||||||| |||||| | ||||||||| Sbjct 6599988 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTACAA 6599929 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 6599928 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 6599898 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||| | || ||||| || |||||| | || || || || Sbjct 6601250 AAAATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACAATCACTTTGGAGGTGGAGCCC 6601191 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | || | || | || || || || || | || ||||| Sbjct 6601190 TCGGATACCATCGAGAATGTGAAGGCCAAGA-TTCAGGATAAGGAGGGAATTCCTCCAGA 6601132 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || ||||||||||| || |||||||||| |||||| | |||||| Sbjct 6601131 TCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTA 6601072 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || || ||||| || | || || ||| Sbjct 6601071 CAACATCCAGAAGGAGTCGACCCTTCACTTGGTT 6601038 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || ||||| || | || Sbjct 6599423 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCATCG 6599364 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | | || || || || | || |||||||| Sbjct 6599363 GACACTATTGAGAATGTGAAGGCTAAGA-TCCAAGATAAGGAGGGAATCCCTCCAGATCA 6599305 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | |||||| | ||||||||| Sbjct 6599304 GCAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGACGCACCCTGTCCGATTACAA 6599245 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 6599244 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 6599214 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || || || || || || |||||| | || || || | | Sbjct 6599651 ATGCAAATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTTTGGAGGTGGAGCCTTCA 6599592 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || ||||| || || || || | || |||||||| Sbjct 6599591 GATACCATTGAAAACGTGAAGGCCAAAATCCAAGATAAGGAGGGAATCCCTCCAGATCAG 6599532 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| ||||||||||||| |||||| || |||||||||| Sbjct 6599531 CAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAAC 6599472 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | || || ||| Sbjct 6599471 ATCCAGAAGGAGTCGACCCTTCACTTGGTT 6599442 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || || |||||| | || || || | | Sbjct 6601019 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTGGAGCCTTCC 6600960 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || ||||| || || || || | || |||||||| Sbjct 6600959 GATACCATTGAAAACGTGAAGGCCAAAATCCAAGATAAGGAGGGAATCCCCCCAGATCAG 6600900 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || |||||||||| |||||| | |||||||||| Sbjct 6600899 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTACAAC 6600840 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | || || ||| Sbjct 6600839 ATCCAGAAGGAGTCGACCCTTCACTTGGTT 6600810 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || || |||||| | || || || | | Sbjct 6600563 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTGGAGCCTTCC 6600504 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || ||||| || || || || | || |||||||| Sbjct 6600503 GATACCATTGAAAACGTGAAGGCCAAAATCCAAGATAAGGAGGGAATCCCCCCAGATCAG 6600444 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| ||||||||||||| |||||| | |||||||||| Sbjct 6600443 CAGCGTCTGATTTTCGCTGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 6600384 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | || || ||| Sbjct 6600383 ATCCAGAAGGAGTCGACCCTTCACTTGGTT 6600354 >seq1295 Length=1233 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || ||||| || | || Sbjct 601 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCATCG 542 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | | || || || || | || |||||||| Sbjct 541 GACACTATTGAGAATGTGAAGGCTAAGA-TCCAAGATAAGGAGGGAATCCCTCCAGATCA 483 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| || ||||||||| Sbjct 482 GCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAA 423 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | || || ||| | | |||| ||||| Sbjct 422 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGAGG 375 Score = 122 bits (134), Expect = 6e-23 Identities = 156/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || || ||||| |||||||| || | || Sbjct 373 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 314 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | | |||| || || | || |||||||| Sbjct 313 GACACTATTGAGAATGTGAAGGCTAAGA-TCCAAGACAG-GAGGGAATCCCCCCAGATCA 256 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| || ||||||||| Sbjct 255 GCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAA 196 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 195 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 165 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || || ||||| || ||||| || | || Sbjct 1057 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCATCG 998 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | | || || || || | || |||||||| Sbjct 997 GACACTATTGAGAATGTGAAGGCTAAGA-TCCAAGATAAGGAGGGAATCCCTCCAGATCA 939 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| | ||||||||| Sbjct 938 GCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 879 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 878 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 848 >seq5124 Length=26641161 Score = 122 bits (134), Expect = 6e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| || || |||||||| || || || | Sbjct 11019183 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCA 11019242 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| | |||| | ||| || ||| ||||||||||| | || |||||| Sbjct 11019243 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 11019302 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || |||||||| | ||||| | || || Sbjct 11019303 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTAT 11019362 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 11019363 AACATTCAGAAGGAGTCCAC 11019382 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| || || || ||||| | || || || | | Sbjct 4301492 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4301551 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || || || || || | || |||||||| Sbjct 4301552 GACACCATCGAGAATGTCAAGGC-CAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCA 4301610 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || ||||| |||| |||||| | ||| ||||| Sbjct 4301611 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACTCTGTCCGACTACAA 4301670 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 4301671 CATCCAGAAGGAGTCGAC 4301688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337988491722992