Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5124 134 3e-26 seq5123 131 4e-25 seq4926 131 4e-25 seq1295 122 2e-22 seq5121 109 1e-18 >seq5124 Length=26641161 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || || |||| ||||| |||| || ||| | || || Sbjct 4301703 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCGTCC 4301644 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || ||||| || Sbjct 4301643 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCC 4301584 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || | ||||| || || ||||| ||| Sbjct 4301583 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTC 4301524 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | |||||| Sbjct 4301523 TTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4301492 Score = 118 bits (130), Expect = 3e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| |||||||| || || || | || || || | | || Sbjct 11019407 ACGCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 11019348 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || || || || || || ||||| || Sbjct 11019347 GCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 11019288 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || ||||| || ||| |||||| || || || | ||| || || | Sbjct 11019287 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAG 11019228 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||||| | || || | ||| | ||||| || Sbjct 11019227 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 11019183 >seq5123 Length=25762168 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| | |||||| || || |||| |||||||||| ||| || | ||||| Sbjct 6598300 AGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCATCC 6598359 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || ||||| || || || || || || || || || || ||||||||| Sbjct 6598360 TCGAGCTGTTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCT 6598419 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || ||||| || | ||||| || | ||||| ||| Sbjct 6598420 TGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTC 6598479 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | |||||| Sbjct 6598480 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6598511 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| |||||||||| ||| || | || ||| Sbjct 6598528 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCT 6598587 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || || || || || || || || || ||||| ||| Sbjct 6598588 TCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTATCT 6598647 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || ||||| || | ||||| || | ||||| ||| Sbjct 6598648 TGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCCAGGGTGATGGTC 6598707 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 6598708 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6598739 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| |||||||||| || || | ||||| Sbjct 6599212 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCC 6599271 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || || || || || || || ||||| ||| Sbjct 6599272 TCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTATCT 6599331 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || ||||| || | ||||| || | ||||| ||| Sbjct 6599332 TGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCCAGGGTGATGGTC 6599391 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 6599392 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6599423 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| | |||||| || || || | || || || | | ||| | ||||| Sbjct 6598756 AGAACCAAGTGCAAAGTGGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCC 6598815 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || || || || || || || ||||||||| Sbjct 6598816 TCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCT 6598875 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || || ||||| || | ||||| || || ||||| ||| Sbjct 6598876 TGAATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACCTCCAAAGTGATGGTC 6598935 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | |||||| Sbjct 6598936 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6598967 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| |||||||||| || || | || ||| Sbjct 6598984 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCT 6599043 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || || || || || || || || || ||||| ||| Sbjct 6599044 TCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTATCT 6599103 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || ||||| || | ||||| || | ||||| ||| Sbjct 6599104 TGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTC 6599163 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 6599164 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6599195 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || || | || || || | | ||| | ||||| Sbjct 6600580 AGAACCAAGTGAAGGGTCGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCC 6600639 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || || || || || || || ||||||||| Sbjct 6600640 TCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCT 6600699 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || || ||||| || | ||||| || | ||||| ||| Sbjct 6600700 TGAATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTC 6600759 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 6600760 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6600791 >seq4926 Length=16738 Score = 131 bits (144), Expect = 4e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| |||| || ||||| ||| |||| ||||| ||| | || || Sbjct 13963 CAAATTTATAATGTAATTGTTACTGCACATGCTTTTATTATAATTTTTTTTATAGTAATA 13904 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || |||||||||||||| || |||||||| | || || |||||| Sbjct 13903 CCAATTATAATTGGAGGATTCGGAAATTGATTAGTACCTTTAATATTAGGAGCCCCTGAT 13844 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCC 7718 || || || ||| | | || |||||||| |||||||||||||| || Sbjct 13843 ATAGCATTCCCACGAATAAATAATATAAGATTTTGATTACTACCCCC 13797 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||| |||||||||||||| | || || || ||||| || | Sbjct 13391 TTCAGGGTGTCCAAAAAATCAAAATAAATGTTGATATAAAATTGGGTCTCCTCCTCCAGC 13450 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| ||||| ||||||| || ||||| Sbjct 13451 TGGATCAAAAAATGATGTATTTAAATTTCGGTCTGTTAA 13489 >seq1295 Length=1233 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| | |||||| || || |||| || || || | | ||| | ||||| Sbjct 618 AGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAGTCAGAAAGAGTGCGTCCATCC 677 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || || || || ||||| || ||||||||| Sbjct 678 TCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 737 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || ||||| || | ||||| || | ||||| ||| Sbjct 738 TGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTC 797 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | |||||| Sbjct 798 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 829 Score = 118 bits (130), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| |||||||||| ||| || | || ||| Sbjct 163 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCT 222 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || || || || || || || || || |||| |||| Sbjct 223 TCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCT-GTCT 281 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || ||||| || | ||||| || | ||||| ||| Sbjct 282 TGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTC 341 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | |||||| Sbjct 342 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 373 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| |||||||||| ||| || | || ||| Sbjct 390 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCT 449 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || || || || || || || || || ||||| ||| Sbjct 450 TCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTATCT 509 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || ||||| || | ||||| || | ||||| ||| Sbjct 510 TGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCCAGGGTGATGGTC 569 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 570 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 601 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| |||||||||| || || | || ||| Sbjct 846 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCT 905 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || || || || || || || || || ||||| ||| Sbjct 906 TCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTATCT 965 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || ||||| || | ||||| || | ||||| ||| Sbjct 966 TGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCCAGGGTGATGGTC 1025 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | |||||| Sbjct 1026 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1057 >seq5121 Length=18748788 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| || ||||| || || |||| ||||| |||| || || Sbjct 15142390 ACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 15142449 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || ||||||||||| || |||||||| | || || || || || || || || Sbjct 15142450 GCGACCGTCCTCTAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCC 15142509 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || |||||||| || || | || || || || Sbjct 15142510 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAA 15142569 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 15142570 GGTGATAGTCTTGCCAGT 15142587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192452908836056