Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5124 172 4e-38 >seq5124 Length=26641161 Score = 172 bits (190), Expect = 4e-38 Identities = 250/349 (72%), Gaps = 7/349 (2%) Strand=Plus/Plus Query 29597 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCC 29656 ||||| |||| |||||||||||| || || || ||||| | ||||||| || Sbjct 3014249 TTTATGTTCAGCTTGGGAAAGGGTCGCGGTGTCCGCTTCAGCTGCTCCTTCAGCGGCTCG 3014308 Query 29657 ACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29716 || |||| ||||||||||| | || |||| |||||||||||| || ||||| | || Sbjct 3014309 ACATGGTTCAGGTAGACGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGA 3014368 Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 || || || || || |||||||| ||||| || | |||| |||||| || ||||| || Sbjct 3014369 CCTGTCACATGGGCGATCATGTAGGTGAGCAGGGCGTAGGAGGCGATATTGAAGGGTACG 3014428 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGC----T 29832 || || |||||||| | ||||||||||||||||||||| ||||| ||| ||| Sbjct 3014429 CCCAGGCCCATGTCGGCACTCCTCTGGTAGAGCTGGCACGATAGCTCACCG-CGCGTGGA 3014487 Query 29833 CACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGG 29891 ||| ||||||| || | || || ||||| || ||| |||| || || | Sbjct 3014488 GACGAAAAACTGTGCCA-GACAGTGACACGGTGGCAGGACCATCTTTGGCATATCAACAG 3014546 Query 29892 GGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | ||||| || ||| ||||||||||| ||| || || ||| |||| Sbjct 3014547 GATTCCAAGCCGACAAGATGATGCGCCGATCTGAGGGATTATTCTTGAT 3014595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406137835615864