Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5124 205 7e-48 >seq5124 Length=26641161 Score = 205 bits (226), Expect = 7e-48 Identities = 432/640 (68%), Gaps = 7/640 (1%) Strand=Plus/Plus Query 27091 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 27150 ||||| |||| |||||||||||| || || || ||||| ||||||||| || Sbjct 3014249 TTTATGTTCAGCTTGGGAAAGGGTCGCGGTGTCCGCTTCAGCTGCTCCTTCAGCGGCTCG 3014308 Query 27151 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 27210 || || | |||||||||||| | ||| |||| |||||||||||| || ||||| | || Sbjct 3014309 ACATGGTTCAGGTAGACGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGA 3014368 Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270 || || || || || |||||||| ||||| || | |||| |||||| || |||||||| Sbjct 3014369 CCTGTCACATGGGCGATCATGTAGGTGAGCAGGGCGTAGGAGGCGATATTGAAGGGTACG 3014428 Query 27271 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT--- 27327 || || |||||||| | ||||||||||||||| ||||| ||||| || ||| | Sbjct 3014429 CCCAGGCCCATGTCGGCACTCCTCTGGTAGAGCTGGCACGATAGCTCACC-GCGCGTGGA 3014487 Query 27328 -ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386 ||| ||||||| | ||| ||||| || || |||| || || || Sbjct 3014488 GACGAAAAACTGTGCCAGACAGTGACACGGTGGCAGGACCATCTTTGGCATATCAACAGG 3014547 Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGC 27446 ||||| || ||| ||||||||||| ||| || || ||| |||| ||| | | Sbjct 3014548 ATTCCAAGCCGACAAGATGATGCGCCGATCTGAGGGATTATTCTTGATAGTGTCAATCAC 3014607 Query 27447 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACTCTG 27505 |||||||||| | ||| | || |||||| | | || || | |||||| | Sbjct 3014608 CCGACGCAGCTGATCGATTCCCTTGCCGCTGTAGTCGTCGTCGCAGGT-GGCGTACTCCG 3014666 Query 27506 CTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCT 27565 | ||||| || | ||| ||||| ||||| ||||| ||||| || || | | | | Sbjct 3014667 CCCCGAAGTGTCGCCACTGGAAGCCGTAGACCGGGCCCAGATCGCCAACGGAACGCTCCG 3014726 Query 27566 CGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCT 27625 || ||| |||||| || |||||| | ||| |||||||||| | || || Sbjct 3014727 TTAACCCCAGGCTGTCCAGGAACTCTCTGCTGCTGTTCCCGTCCCAGATGTGCACGTTCT 3014786 Query 27626 TCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGA 27685 || | ||| |||| || || || |||||||||||||||||||| | | Sbjct 3014787 TCGCCTGCAGCAACTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCTA 3014846 Query 27686 CGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 | || | || || | |||||| || || || ||||| Sbjct 3014847 CTGCGCGGAAGAACACACGCTTGGTGGTCAGCAGTGGAAA 3014886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369484124737244