Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_030918.1 Length=36629 Score E Sequences producing significant alignments: (Bits) Value seq3473 2172 0.0 seq301 1056 0.0 >seq3473 Length=3319 Score = 2172 bits (2408), Expect = 0.0 Identities = 1341/1441 (93%), Gaps = 0/1441 (0%) Strand=Plus/Plus Query 29990 CCGGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACCTGGACGGTCA 30049 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1 CCGGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACTTGGACCGTCA 60 Query 30050 GCATCGGCACCGACGGCCCGCCCGTGGTCAATGCGCGGATCGTCTGGAAGCTCCAGGGCG 30109 |||| ||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 61 GCATTGGCACGGACGGCCCGCCCGTCGTCAATGCGCGGATCGTCTGGACGCTCCAGGGCG 120 Query 30110 AGCCGGACCTGGTCCTGGTCATCACCGGCAATCGGATCATCGCTTGGACGTTCGCGCCGG 30169 |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 121 AGCCGGACCTGGTCCTGGTCATCACCGGCAATCGCATCATCGCCTGGACCTTCGCGCCGG 180 Query 30170 ACTGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAAT 30229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ACTGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAAT 240 Query 30230 CGGCCGTGACCCAGCGCCGAGCCATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACA 30289 | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 241 CAGCCGTGACCCAGCGCCGGGCTATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACA 300 Query 30290 TGTACGCGGTGGACCGCGAGCGGCAGCTGCTGGACATGACGCTGTTCGGCTGGGGCGCGC 30349 |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 301 TGTACGCGGTAGACCGCGAGCGGCAGCTCCTGGACATGACGCTGTTTGGCTGGGGCGCGC 360 Query 30350 GCATTTGGGCGCTGCCGATCTGGCCTGATATCCAGCTGCTCCAGCAGCCGCTGGCGGCCG 30409 | ||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||| Sbjct 361 GAATTTGGGCGCTGCCGATTTGGCCTGATATCCAACTGCTCCAAGAACCGCTGGCGGCCG 420 Query 30410 GCTCGCTGAGCATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTAGCGA 30469 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 421 GCTCGCTGAACATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTGGCGA 480 Query 30470 TGCTGCGCGGCGAGGACGCCTTCAACTATGAGGTCGTCGAGGTCAAGGCAGTGACCGCCG 30529 |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 481 TGCTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCG 540 Query 30530 CCGGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACC 30589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CCGGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACC 600 Query 30590 CGGTACGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGC 30649 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGGTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGC 660 Query 30650 AGTCTGCGCGGGTGTCGTTCCTTGTGATGGAACCCAGCAGTTGGCCCGAGGTGATGCCGG 30709 |||||||||||||||||||||| | ||||| |||||| ||||||||||| ||||||| Sbjct 661 AGTCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGG 720 Query 30710 CGACGATGTACCGGGGGCGTCCTGTCCTGGAACAGCGCCCGGACGAAAGCGAAGACCTGA 30769 |||||| ||| ||||||| || || ||||| |||||||||||||||||||||||||| | Sbjct 721 CGACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCGCCCGGACGAAAGCGAAGACCTCA 780 Query 30770 CGTCGAGCTATCAGCGCTTGCTATCCACCCTGGACAACGGCAGCGCGATTCCTCGCGTGA 30829 | || |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| Sbjct 781 CCTCCAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCGATTCCCCGCGTGA 840 Query 30830 CCGACGTCGCCGGGATGGCTCTACCGGTCATCGGCCATCGCTGGATCGGCATGGGCCGAG 30889 ||||||||||||||||||| || || |||||||| ||||||||||||||||||||||||| Sbjct 841 CCGACGTCGCCGGGATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAG 900 Query 30890 CGGAGCGGTCTGCGTTCCGCAGCCTCGTTTATGCGCTGCGCGGTCAGCAGAAGCCGCTGT 30949 | |||||||| |||||||||||||| || ||||||||||| || |||||||||||||| | Sbjct 901 CCGAGCGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTGCGAGGCCAGCAGAAGCCGCTAT 960 Query 30950 GGGTGCCGACTCACGCCGACGACCTGACACTGGTCGCCACCGTCTCGCAGCTGTCCACCG 31009 |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 961 GGGTGCCGACCCACGCCGACGACCTGACCCTAGTCGCCACCGTCTCGCAGCTGTCCACTG 1020 Query 31010 CCTTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCTAACGGCCGGCCGGGCCGTCGCG 31069 | |||||||||||||||||||||||||||||||||| || || || ||||| ||||||| Sbjct 1021 CGCTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGGCGACCGGGTCGTCGCG 1080 Query 31070 ACATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACNNNNNNNN 31129 | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 ATATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACCAGCACCG 1140 Query 31130 NNNNNNNNNNNNNNNNNNAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGC 31189 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 AGCTGGACGCCGACACCGAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGC 1200 Query 31190 CGACAGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGATCG 31249 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1201 CGACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGGTCG 1260 Query 31250 AGATCGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACTTTCAAAGGGG 31309 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1261 AGATTGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACATTCAAAGGGG 1320 Query 31310 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 31369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 1380 Query 31370 CTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 31429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 CTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 1440 Query 31430 A 31430 | Sbjct 1441 A 1441 Score = 1085 bits (1202), Expect = 0.0 Identities = 715/785 (91%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 33808 GACCGGACACCTCGGGCGGTCACAGTGCGGCGTTTGATCGAGGCGCCATATCGCGAGTTG 33867 |||||||| ||||||||| |||| ||||| || |||||||||| || |||||||| Sbjct 2536 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCACCCTATCGCGAACCT 2595 Query 33868 GCC---GGGGTGATCGATCCGGCCAACT-TGCAGCTCCTGGACGTGTCCGCGTCGTACCT 33923 ||| || ||||||||||| | ||| | | ||||||||||||||| |||||| | || Sbjct 2596 GCCCCGGGCGTGATCGATCCCGGCAAATCTCCAGCTCCTGGACGTGAGCGCGTCCTTACT 2655 Query 33924 TG-CAGCCTTGGCC-GAGGCGCCGACGAGCCTGTCGCAGAGCTACACCTTGACCGACCGC 33981 || | || ||||| ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 2656 TGGCCGCGCTGGCCCGAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 2715 Query 33982 GTCGGCAGTTCTGGCGCGTTCGTGGATCGAGGAACCGGCGACTGGTGCCCGACTGGACTA 34041 |||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| Sbjct 2716 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 2775 Query 34042 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 34101 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2776 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 2835 Query 34102 CGGCTGGAGGACGTCACTGTCGGCCAGGCGGCCGTGGTGGATGACGAAATCGTCCGGGTC 34161 ||||||||||||||||||||||||||||| || || ||||| ||||| || ||||||||| Sbjct 2836 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCAGTCGTGGACGACGAGATAGTCCGGGTC 2895 Query 34162 GATGCGGTCAATTACGCCAGCGGTACTGTCACCCTGGCGCGCGGCTGCGCCGATACCGTG 34221 ||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||| Sbjct 2896 GATGCGGTCAACTACGCCAGCGGCACGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 2955 Query 34222 CCGGCCAAGCACTTGGCCGGGGCTCGGGTCTGGTTCTATGACACGTTCGAAGCGGTGGAC 34281 ||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 2956 CCGGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCTGTGGAC 3015 Query 34282 GAGACGGTATACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACCAACACCAGCGAG 34341 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3016 GAAACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACGAACACCAGCGAG 3075 Query 34342 GGCCAGCTCGCCCCGGCGCTGGCCGCTACCGACAGCCTGACGCTGACCGGGCGCCAAGGT 34401 ||||| || ||||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 3076 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTCACCCTGACCGGGCGCCAAGGT 3135 Query 34402 AAGCCATACCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAGGTCTAC 34461 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 3136 AAGCCGTATCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAAGTCTAC 3195 Query 34462 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAATTGATC 34521 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 3196 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 3255 Query 34522 GATACCACTGTCGGCAACATCGGGCCCGAAGATGGGGCGACGGTGACGCTCCAGGTCTAC 34581 |||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||| ||| Sbjct 3256 GATACCACGGTCGGCAACATCGGACCCGAAGATGGGGCGACGGTTACGCTCCTGGT-TAC 3314 Query 34582 AGCGG 34586 ||||| Sbjct 3315 AGCGG 3319 >seq301 Length=948 Score = 1056 bits (1170), Expect = 0.0 Identities = 691/761 (91%), Gaps = 3/761 (0%) Strand=Plus/Plus Query 7105 CCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 7164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 CCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 62 Query 7165 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 7224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 122 Query 7225 GAGCCGGCCGAAGACTTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 7284 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 182 Query 7285 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACC 7344 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACA 242 Query 7345 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 7404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 302 Query 7405 GTCCTGGAGCTGCTGCGCAGCAAAGGGCTTATCCGCTTCATCCGCACCAAGGAAGAGGTG 7464 ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 303 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGTG 362 Query 7465 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCAAGGGGCTTCCGGGGCTGACCGTG 7524 |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || Sbjct 363 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 422 Query 7525 AACTCCGGCATCGAAGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 7584 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 AACACCGGCATCGAGGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 482 Query 7585 CGACACCATCGCTTTCTGCTGGGCCTCTGGCTTGATCCAGTTCGGTGACCAGGTGCCCGA 7644 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 483 CGACACCATCGCTTTCTGCTGGGCCTCTGGCCTGATCCAGTTCGGTGACCAGGTGCCCGA 542 Query 7645 CGGTGCAATCGAGATCGCCCGTGGGGACGACCAGGTCGTTCGCGAAATCATCGAAGTCAC 7704 || || |||||||||||||||||||||||||||||||||||||||| | ||| || Sbjct 543 GGGCGCCATCGAGATCGCCCGTGGGGACGACCAGGTCGTTCGCGAAAACCTCGTGACCAA 602 Query 7705 CTCGCGCCACGCCTACGACGGCAAGTCGCTCCTGGTGCCCGGCATACCCGAGGCAAAAAA 7764 ||||| ||||| |||||| | |||||||||||| || ||| ||||||| || ||| Sbjct 603 TTCGCGGCACGCTTACGACAACGTGTCGCTCCTGGTTCCGGGCGTACCCGAAGCGGCAAA 662 Query 7765 CCAGGCGGAAGGCATTGACGCCCTCGAAAGGTTCGTTCGCTGGATCGCCTCGCACAACAG 7824 ||| | || ||| ||||| || || | ||| | || ||||| | || |||| Sbjct 663 CCAAACCGAGGGCGGGGACGCACTGGAGTGCTTCATCCGTCTTCTCGCCAAGTACGACAG 722 Query 7825 CGAGTCGTTCCAGGT---TTTCATGGGAGACGTGTGACATG 7862 || | |||||||| || ||| ||||||||||||| Sbjct 723 CGCCGCTTTCCAGGTCGCTTATGTGGAGGACGTGTGACATG 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117084075293208