Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5124 410 2e-109 seq5122 123 4e-23 >seq5124 Length=26641161 Score = 410 bits (454), Expect = 2e-109 Identities = 1212/1857 (65%), Gaps = 20/1857 (1%) Strand=Plus/Plus Query 75362 TTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTAC 75421 || ||||| | || ||||||||||||| | | ||||| ||||| || ||||||||| Sbjct 10932357 TTCTTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTAC 10932416 Query 75422 ATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAA 75481 || || ||||| ||||| |||| ||| || || ||| || ||||| ||| Sbjct 10932417 ATTCCGGTTTTAAGACCAGCTTTCCAGGAGTAAAAGTGTATGGAGGTCAGTTTTCCATAG 10932476 Query 75482 CTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCA 75541 | || || || | |||||| || | ||||||||| ||||| ||||| || || | || Sbjct 10932477 TTGGGCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCACCACGGTCG 10932536 Query 75542 GCCGCCATTTTTATAATGGTCTTT--TGAGGAATTTCCCAAATAGTTTTGAAAACTTGTT 75599 || |||||||| || ||| ||| |||| |||||||| | || ||| | | | Sbjct 10932537 GCGGCCATTTTAATCGTGGACTTAACTGAG--ATTTCCCACACCGTCTTGTACAGATCGC 10932594 Query 75600 TGATATCATCTGGAAGATTTG-----TATTTTGAATGGATCCGCCATCAGATATAATTGT 75654 || | | ||||| ||| | ||||| || || || | ||||| || Sbjct 10932595 -GA-ACCCTCTGGGGGATGGCCTCAATGTTTTGGATTGAGCCCCTGCTGGATATGATCTG 10932652 Query 75655 ATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 75714 ||||| || || || | |||||| | ||| |||| | | | | |||| | || Sbjct 10932653 GTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCTGTTAGGTCGCGCAACAAATGATGGTT 10932712 Query 75715 AACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTC 75774 || | ||||| || || |||| |||| | ||||| || || ||||||| || || Sbjct 10932713 GACCACCTGAAACTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTC 10932772 Query 75775 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAA 75834 | ||||||||||| |||| |||||||| || || ||||| ||||| || || |||| Sbjct 10932773 GAAGGATTCATTGTTGCCCATTATTTGAGCTGTAGATGCAGTGGGCATTGGAGCAACCAG 10932832 Query 75835 TAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAG 75894 | || | || ||| || | |||| || || || | | ||| |||||||| Sbjct 10932833 CAGGGAGTTGCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAG 10932892 Query 75895 ATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCC 75954 | | ||| || ||||| | ||||| || | |||||| ||||| | || Sbjct 10932893 GTTCGTTGGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCC 10932952 Query 75955 ATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACC 76014 | ||| |||||||||| || || | | || ||||| || || || || || || || Sbjct 10932953 CTCATAGGTTTCGTAAGGGCCTTCGGTCTGGGCCAGTTCACAGCTGGCTTCCAAGGCTCC 10933012 Query 76015 GTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATCAAAAG 76073 || ||||| |||||||| |||| || ||| || | | ||||| ||| ||| | | Sbjct 10933013 ATAGTAAATGGTTTCGAATATCTGCTGATTCAACAGACCG-GCTTCTTCACTTTCATACG 10933071 Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 | | | | ||||| || || || || | |||||||| || || || | || | | Sbjct 10933072 GGAATCGCATGAGAATCAAGGCGTCAGCGAATCCCTGAATACCTATGCCCACGGGACGGT 10933131 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 | ||| ||| || | || ||||| | || ||||| || ||||| || || || | Sbjct 10933132 GCCTCAAATTTGACTTCCTTGCCTCTGGCAAGGGATAATAGTTGATATCAATTATCTTGT 10933191 Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TTTTC- 76250 | ||||||||| ||||| || || ||||| || || |||||| | | ||| Sbjct 10933192 TTAGATTTCTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTCT 10933251 Query 76251 CATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAG 76310 | | | |||||||| || || || || ||||| | || || || |||| ||||| | Sbjct 10933252 CCGGTGTGACAAACATGTTGAGGGCAATGGATGCCAAGTTGCAGACAGCTATCTCATCCG 10933311 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 || |||| | || |||||||| | || || |||||||| || |||| ||| | Sbjct 10933312 GCGCGGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCT 10933371 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 | ||||||||||| |||| || | |||||| | || | ||||| |||||||||| | Sbjct 10933372 GCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCA 10933431 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCT 76490 || | || || || | | ||| | | | ||| || | | ||| ||| Sbjct 10933432 CTTGCGCCTCAATGATGGCATACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCTCGAC 10933491 Query 76491 TCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAAC 76550 |||| || |||| ||| | | ||| |||||||| ||||| ||||| | | | Sbjct 10933492 CCTCTTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGC 10933551 Query 76551 CAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAA 76610 |||| |||| | || ||||| | ||||| ||||| | ||| || || ||||| | Sbjct 10933552 CAGGGCATTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGCTTCATGA 10933611 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTG 76670 ||||||| |||||||| ||||| ||| ||||| |||| | | ||||| || || | Sbjct 10933612 AGAGATCGGGTATCCACAGAGCGTAAAACAGATCGCGGGCGCGATTCTCTTCCTTGCCCG 10933671 Query 76671 TATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 76730 | || || || || || |||||||| | | ||| || ||||| || || || || || | Sbjct 10933672 TGTTTTTCTTTAGTTCGAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGG 10933731 Query 76731 CCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAA 76790 | | |||| || || || |||||||| || | ||| | || || || | | Sbjct 10933732 CAAAGGCACCGGGACGCTTGCCGCCTCCCTGGTCCACATAACGCGCCACATTGTTGAAGA 10933791 Query 76791 CTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCAC 76850 | || | ||| |||| | || || || || || ||||| || |||| | | || Sbjct 10933792 CCCTGAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCGCAAATCGAGGTGCCCT 10933851 Query 76851 ATGCACGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908 ||||||||| | | | | | || || || || || || || ||||| | || Sbjct 10933852 TTGCACGAATGCAATGCACGTTG--AGTCCAATGCCACCAGCAGACTTGGAGATCATGGC 10933909 Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968 || | | || | | | | |||||||| || || | ||||| | ||||| || Sbjct 10933910 GCACTGCTCCACAGACTTAAAAATGCCCTCGATTGAGTCGGCAGTCATGGTCAGAAGGAA 10933969 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028 ||| |||| || | | || | ||| ||||| || || |||||||| || Sbjct 10933970 ACACGACGACAGCTGCGGGCGGTTTGTGGCAGCAGCAAACAGCGTGGGCGATGCATGCGT 10934029 Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATG 77088 || | || || || |||||||| ||||| | | || ||||||||| | ||| Sbjct 10934030 AAAGTAGCGCTCCGATAGAAGATTGTAGGTTTCCACGGCCGCATCTATATCCTCTCCATG 10934089 Query 77089 AATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTAT 77148 ||||| | || || ||||||| ||||||||| ||||| ||| | |||| ||| | Sbjct 10934090 GATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTGT 10934149 Query 77149 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 || | | || || |||| ||| ||||| ||||||||||| || |||||| Sbjct 10934150 CTTGAGGAGATAGGAACGCTCCAGAGTCTTAAAGCCAAAATAGTTATAGCCAAAGTC 10934206 >seq5122 Length=22589142 Score = 123 bits (136), Expect = 4e-23 Identities = 452/701 (64%), Gaps = 9/701 (1%) Strand=Plus/Minus Query 46465 TCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACC 46524 || |||||||| ||||| ||| ||||| ||||||||||| || || | || || Sbjct 17925843 TCCGCAACGAACTCTATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATTAACG 17925784 Query 46525 GGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCC--GATATTATCGATG 46582 || || || || || || ||||| || ||||| | || || || ||| | |||||| Sbjct 17925783 GGCAGGGCATCGGTGAGGAACTCCTGCTCAATCGCCACCGCGTCACGGATGATCTCGATG 17925724 Query 46583 TTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCAC 46642 | | | | | | ||| | |||| || || | ||||| | ||||| || | Sbjct 17925723 ATGCGCT--CGTGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTCGC 17925666 Query 46643 AATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTC 46702 | || | ||| || || | | || | ||||| || || || || ||||||||||| | Sbjct 17925665 AGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAGGCATTAGAC 17925606 Query 46703 CACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACA 46761 | ||||| || ||||| || || | || |||| | || ||||| ||||| || || Sbjct 17925605 CGCGCTTCTTAAGCCAGAAAATGGATGC-AAAGCTGCCGCTGAAGAAGATGCCCTCCACG 17925547 Query 46762 GCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--ATGA-ATCCACCTTTGA 46818 || || || |||| | | ||| ||| || ||||| || | || ||||| | Sbjct 17925546 GCGGCAAAGGCGATGATACGCTCCCCGAAATTGGCAGACTTGGAGGAGATCCAGGACAGG 17925487 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 ||||| || ||||| ||||||| ||||| ||||| ||||| || || || | | Sbjct 17925486 GCCCAGTCTGCCTTGCGCTTTACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCG 17925427 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 | | ||| | || || || || | | ||| ||||| || || || | | Sbjct 17925426 CGCTGGTTCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAGTGCACG 17925367 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 || || || || ||||| || ||||| || || | ||| || || | ||| ||||| | Sbjct 17925366 TTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGACCTGCACCTCCTGA 17925307 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 | || || || || |||||| || || || ||||| || || || || |||| Sbjct 17925306 CTGAAGCGCTCCACCAGATTCTCGTTTACGATGCCATCGGAGGCGGCGAAGAAAGCCAGC 17925247 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTT 47118 || || || |||| || ||| ||||| | ||||||| | | || || Sbjct 17925246 ACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGTCGGTGCCAGTCAGTAAGGTCCTTG 17925187 Query 47119 GATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 || | ||| || || || | |||||||| || || || || Sbjct 17925186 GACAAATCCACCTCCTCGACGGTCCAGAAAGAGGCTTCAGC 17925146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712888736551680