Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4471 159 4e-34 seq4681 95.1 1e-14 >seq4471 Length=3711889 Score = 159 bits (176), Expect = 4e-34 Identities = 554/849 (65%), Gaps = 28/849 (3%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| | ||||| |||| || || ||||| ||||| || || || || || Sbjct 604347 ACTCCCATACGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGC 604288 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCA 16781 || || |||||||||||| ||||| || | | || | || ||| | || | Sbjct 604287 GAGATCATCTCCATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACA--CCAA 604230 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 | || | | || | || || ||||| || || || ||| |||| | ||||| |||| Sbjct 604229 GCTCCACCAGCAAACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCA 604170 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || | ||| ||||| || || || | || ||||| || | ||||| | Sbjct 604169 TGCCGATCAAGTTTACGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGT 604110 Query 16902 CCTTAATAATA-CTAGCAA---CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 | ||||| | | | ||| | | || || || | | || || | ||| Sbjct 604109 CGCGGATAATCTCGATGATGCGCTCTCGCTTTGGTCGCTGCACG----AGGTGCTGGAAC 604054 Query 16958 ATCA-GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAA 17016 |||| ||| || || ||||| || || || ||||| | | ||||||||||| || || Sbjct 604053 ATCAAGACG-GCAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAA 603995 Query 17017 TGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGA 17076 ||||| || |||||| || |||||||||| ||| || || | |||||| || Sbjct 603994 TGTCAGGCCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCT 603935 Query 17077 AAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTT 17135 |||||| || ||||| |||| ||||| ||||| | ||| || | | | || | ||| Sbjct 603934 AAAGAAGATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTT 603875 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATCGTTTC 17193 | | || |||| || |||| || || || |||||| || | |||||| || Sbjct 603874 GGATGAGA-TCCAGGAAAGCGCCCAGTCCGCCTTGCGCTTTA--CAGCCGGCATCGTCTC 603818 Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAG 17253 ||||| || || | | ||| | || | || || || || ||||| || | Sbjct 603817 GATGGCATTGAACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGAC 603758 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 || |||||||||||||| | ||| ||||| || ||||| || ||||| ||||| || || Sbjct 603757 ACTATACATTTCGGAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGC 603698 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || | || ||||| ||| | ||||| || | || || ||||||||||| || || Sbjct 603697 CTCAGTGATCTGAACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATC 603638 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA---ATATTTTTCGTCCGGTGTAAG 17430 | ||||| || || |||| | || ||||| | | |||||| | || | Sbjct 603637 GGAAGCGGCAAAGAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCC--TTTAGG 603580 Query 17431 AACG-CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAG 17489 || |||||||| | | ||| ||||| | ||||||||| || ||||| || || Sbjct 603579 --CGATGCCAGTCCGTCAGATCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAG 603522 Query 17490 CCACTGCCT 17498 || | |||| Sbjct 603521 CCTCAGCCT 603513 >seq4681 Length=7884553 Score = 95.1 bits (104), Expect = 1e-14 Identities = 178/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || || | ||||||||| | | || |||||||| | ||||||| | || Sbjct 5741872 TTCATGTACCGGACCTTTCCGAAAATAGGGCGCTCCTTCCAACCCATGTCGTGCACACCG 5741813 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902 | | | ||| | || || || || ||||| || || |||||| | ||| ||| Sbjct 5741812 CCAATAGACCACATACACCCAACATAACCGTTAGGGTCACGTCCATCGAGGCTGTACTTA 5741753 Query 119903 TCGTTTAAGTAGATA---CAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGT 119959 ||||||| ||| ||| || || | | ||| ||||||||| | |||| || || Sbjct 5741752 TCGTTTA-GTA-ATATCGCATACTCC-AGCGCCTCTTCAGGAGTGGCAGTCCACTCGAGA 5741696 Query 119960 AtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGA 120019 |||||||| ||||||||||| || | | || ||||| || || || || |||| ||| Sbjct 5741695 ATTTTTTTTGCCCAGTACATGCGCAGAAAGCCGTGCATCTTGCCCTCGCGCACCAGTTGC 5741636 Query 120020 AGTTGTGCGGCGTTCCA 120036 ||||| || | |||||| Sbjct 5741635 AGTTGCGCCGAGTTCCA 5741619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517513602743280