Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4471 161 1e-34 seq4681 104 2e-17 >seq4471 Length=3711889 Score = 161 bits (178), Expect = 1e-34 Identities = 556/853 (65%), Gaps = 18/853 (2%) Strand=Plus/Minus Query 15893 TTAGAAGCAACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTT 15952 |||| || || ||||| | ||||| || | || || ||||||||||| || ||| Sbjct 604356 TTAGTGGCCACTCCCATACGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTT 604297 Query 15953 CCCTCTAAAGATATATTTTCCATAAAATC-AAAGGGAT-TAGTAGCTGAAAATATCTTAG 16010 || || | || || | ||||| |||| |||||| | | | | || | || | || Sbjct 604296 CCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCT-TTCC 604238 Query 16011 AGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGT 16070 | ||| || ||| | || | ||||| ||||| || || || || |||| | || Sbjct 604237 AACACCA-AGCTCCACCAGCAAACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGT 604179 Query 16071 CGCAATTAATTCCTAT-AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATC 16129 ||||||| || || || |||| ||| ||||| || | ||| | || | || || || Sbjct 604178 CGCAATTCATGCCGATCAAGTT-TACGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATG 604120 Query 16130 ACAACCGCTTCTTTAATGATATCGGTG----GCTCGTGTTTCAGACGGTGTATGGTTTAG 16185 | ||||| || || || ||| || |||| | || | || || | | || Sbjct 604119 GCCACCGCGTCGCGGATAATCTCGATGATGCGCTCTCGCTTTGGTCGCTGCACG----AG 604064 Query 16186 GTGTTTAAACATTAGACACG-CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTT 16244 ||| | ||||| | | ||| | |||||||| || | |||||||| | | ||||||| Sbjct 604063 GTGCTGGAACATCA-AGACGGCAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTT 604005 Query 16245 CGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAA 16304 ||||||| || || | || ||||| || |||||||||| |||||| || | || | Sbjct 604004 CGTTGGAGAATGTCAGGCCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGA 603945 Query 16305 ATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG 16364 | || |||||| || ||||| || | ||||| ||||| | ||| || | | Sbjct 603944 AGCTGCCGCTAAAGAAGATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAAT 603885 Query 16365 TAGC-ATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 | || ||| | | ||||| | |||| || || || | |||| | | Sbjct 603884 TGGCTGACTTGGATGAG-ATCCAGGAAAGCGCCCAGTCCGCCTTGCGCTTTACAGCCGGC 603826 Query 16424 ATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCA 16483 ||||| || ||||| || |||| | ||| | || ||| || || || || Sbjct 603825 ATCGTCTCGATGGCATTGAACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTGTCG 603766 Query 16484 ATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAG 16543 ||||| | ||| |||||||| ||||| | ||| || || || ||||| || || |||||| Sbjct 603765 ATCAGGACACTATACATTTCGGAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAG 603706 Query 16544 CATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACG 16603 || || ||||| | || || || ||| | |||||| || |||||||||| |||||| Sbjct 603705 CAGCGTGCCTCAGTGATCTGAACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACG 603646 Query 16604 ATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGAT 16663 || || || || ||||| || |||| | ||| ||||| | ||||| Sbjct 603645 ATTCCATCGGAAGCGGCAAAGAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCC 603586 Query 16664 GTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAG 16723 | || |||||| || | | ||| ||||| | ||||||||| || ||||| ||| Sbjct 603585 TTTAGGCGATGCCAGTCCGTCAGATCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAG 603526 Query 16724 CTAGCCACTGCCT 16736 |||| | |||| Sbjct 603525 GAAGCCTCAGCCT 603513 >seq4681 Length=7884553 Score = 104 bits (114), Expect = 2e-17 Identities = 184/262 (70%), Gaps = 10/262 (4%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCC--AAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTC 118993 |||||||| || | |||||| ||||| || ||||||||||| | ||||||| | | Sbjct 5741872 TTCATGTACCGGACCTTTCCGAAAATAGGG--CGCTCCTTCCAACCCATGTCGTGCACAC 5741815 Query 118994 CTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACT 119053 | | | | ||| | ||| || || || ||||| || || ||| || | ||||| Sbjct 5741814 CGCCAATAGACCACATACACCCAACATAACCGTTAGGGTCACGTCCATCGAGGCTGTACT 5741755 Query 119054 TATCGTTTAAGTAGATA---CAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCA 119110 ||||||||| ||| ||| || || | | ||| ||| ||||| | |||| || | Sbjct 5741754 TATCGTTTA-GTA-ATATCGCATACTCC-AGCGCCTCTTCAGGAGTGGCAGTCCACTCGA 5741698 Query 119111 GTAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCT 119170 | |||||||| ||||||||||| || | | | |||||||| || |||||| | || | Sbjct 5741697 GAATTTTTTTTGCCCAGTACATGCGCAGAAAGCCGTGCATCTTGCCCTCGCGCACCAGTT 5741638 Query 119171 GAAGTTGTGCGGTGTTCCATAG 119192 | ||||| || | |||||| || Sbjct 5741637 GCAGTTGCGCCGAGTTCCACAG 5741616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511382781804720