Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4563 365 5e-96 seq4471 206 3e-48 >seq4563 Length=5383265 Score = 365 bits (404), Expect = 5e-96 Identities = 1210/1874 (65%), Gaps = 16/1874 (1%) Strand=Plus/Minus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 |||||||| ||||| ||||||| | | || || || || || ||||| |||||||| Sbjct 4594972 CTTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCC 4594913 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 ||||| || || |||| |||||| || || || ||||| ||| | || Sbjct 4594912 GGTTTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTGG 4594853 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 ||||||| ||| ||||| | || ||||| ||||| || || || || | || || || Sbjct 4594852 CTCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGC 4594793 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 53036 |||||| || | | ||| | |||||||||| ||||| |||| || | | | Sbjct 4594792 CATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAACCTT 4594733 Query 53037 CTTCTGGAAG-GTTTG--TATTCTGAATAGATCCACCATCTACCA-TAATCCTATTCTTG 53092 || ||||| || | |||| ||||| || || || || | | || ||||| Sbjct 4594732 CTG-TGGAATAGTCTCAATATTTTGAATTGAACC-CCTGCTGGAAATGATTTGGTTCTTC 4594675 Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 || ||||| | ||| || | ||| || || | || | | ||| | ||||| || Sbjct 4594674 ATGTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCACC 4594615 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 || ||||| ||||||| ||||| | || ||||||||| | |||||||| || | ||| Sbjct 4594614 TGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGAT 4594555 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272 || || || |||| ||| |||||||| ||||| || |||||||| || |||| | Sbjct 4594554 TCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAG 4594495 Query 53273 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 53332 || | | ||||| | | || || ||||| || ||| | ||| || | || | Sbjct 4594494 TTCCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCGTC 4594435 Query 53333 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 53392 || || || | ||| || || || | ||| |||| Sbjct 4594434 GGAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAA 4594375 Query 53393 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 53452 || |||||||| ||||| ||| ||||| ||||||||| || || || || || || ||| Sbjct 4594374 GTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAA 4594315 Query 53453 ATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGGATAATT 53511 || |||||||| |||| || ||| | || | ||||| || ||| |||| | Sbjct 4594314 ATCGTTTCGAATATCTGCTGATTCAAGAGGCTC-GCTTCATCACTTTCATATGGGAATCG 4594256 Query 53512 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 53571 | |||||| || || || || || || ||||| || || || | || | ||| ||| Sbjct 4594255 CATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAA 4594196 Query 53572 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT 53631 ||| || | || ||||| | |||||| | || ||||| || || || ||||| || Sbjct 4594195 ATTGGACTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATT 4594136 Query 53632 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTCCATCTAT 53688 |||| || ||| || ||||| ||||| ||||| || | | | | | Sbjct 4594135 TCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTATGTCTTTTCCGGTGT 4594076 Query 53689 TACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 53748 ||||||||||| | ||||| ||||||| |||||||| || | ||||| | | Sbjct 4594075 GACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGA 4594016 Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 || | | || || ||||| | ||||| || || ||||| || | ||| || || || Sbjct 4594015 GTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTT 4593956 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 |||||| |||| || |||||||| | || || | || | |||||||| | || | Sbjct 4593955 ACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGC 4593896 Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCT 53928 ||| ||||| || ||| | | ||||||| | | | ||| | | |||| Sbjct 4593895 TTCAATAATGGCGAACCATAAGGATTGAGCCTTAACTGTTCGGTTG--GCACGGCCCTCT 4593838 Query 53929 T--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 53986 | || ||| ||| || |||||| || || ||||| |||| || | ||||| Sbjct 4593837 TGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGG 4593778 Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 |||| | ||| ||||| | ||||| ||||| | ||| || |||||||| || ||| Sbjct 4593777 CATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGA 4593718 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 ||||| ||||| | || ||| ||||||| || | || || || || || || || Sbjct 4593717 TCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTTT 4593658 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 || || || || || || | | | |||||| ||||| || |||| ||| || | | Sbjct 4593657 TTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAAG 4593598 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 |||| || || ||| ||||||||||| | || | || |||||| | || ||| Sbjct 4593597 GCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGACCCTC 4593538 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 | ||| |||| | |||||||| | ||||| || ||| | || | | || | || Sbjct 4593537 AGCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTCCGCATATCGAAGTACCCTTTGCT 4593478 Query 54287 CGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 || ||| | || ||| || || || || || |||||| || | || ||| | Sbjct 4593477 CGGATACAATGAACATTTAGTCCAATGCCACCAGCAGATTTAGAAATCATGGCACATTGC 4593418 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 | | | | | | ||||| || || || | ||||| | | || ||||| | Sbjct 4593417 TCCACAGACTTAAAAATGCCTTCGATGGAGTCGGCTGTCATGGTTAAAAGGAAACATGAA 4593358 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 || | || | ||| | || | || ||| | || || || || || || || | Sbjct 4593357 GATAGCTGCGGCCGATTTGTGGCTGCTGCAAAAAGCGTTGGTGATGCATGAGTGAAGTAC 4593298 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCT 54526 || || | ||||| ||||| || | || | ||| ||||| || ||||| Sbjct 4593297 CGCTCTGACAAAAGATTATACGTTTCTACGGCCGCGTCGATATCTTCCCCGTGGATTCCG 4593238 Query 54527 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGC 54586 | || || ||||| ||||| || || || | |||| ||||||| |||| | || | | Sbjct 4593237 ATCGCAACGCGCATCAACATATGTTGCGGCCGTTCAGCGATCTTACCGTTTCTCTTTAAC 4593178 Query 54587 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 54646 || || || ||| | |||||||| || ||||| || || |||||| || ||||| Sbjct 4593177 AAATAAGAACGTTCGAGGGTTTTAAACCCGAAATAATTATACCCAAAGTCGCGATCGTAG 4593118 Query 54647 ATAATAACTGAGTT 54660 || ||| ||| || Sbjct 4593117 ATTATAGATGAATT 4593104 >seq4471 Length=3711889 Score = 206 bits (228), Expect = 3e-48 Identities = 555/839 (66%), Gaps = 11/839 (1%) Strand=Plus/Minus Query 23835 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 23894 |||||||| ||||| || ||||| || ||||| || || || || || || | Sbjct 604347 ACTCCCATACGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGC 604288 Query 23895 GATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAAT 23954 || || | |||||||||| | | || || | || ||||| |||| || |||| Sbjct 604287 GAGATCATCTCCATGAAATTGAAAGGGTTCTTGGTGTTGTAGAT-CTTTCCAACACCAAG 604229 Query 23955 -TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCAT 24013 || | ||| | |||||||||||||| || || ||||| || |||||||| Sbjct 604228 CTCCACCAGCAAACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCAT 604169 Query 24014 TCCTAT-AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGT 24072 || || ||||||| | ||||| || | ||||| || || || ||||| | ||||||| Sbjct 604168 GCCGATCAAGTTTA-CGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGT 604110 Query 24073 CTGTTATAATA--GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACAT 24130 | ||||| ||| | | | || | ||| | | || | || | ||||| Sbjct 604109 CGCGGATAATCTCGATGATGCGCTCTCGCT--TTGGTCGCTGCACGAGGTGCTGGAACAT 604052 Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || |||||||| | || ||||| | || | ||||||||| || || Sbjct 604051 CAAGACGGCAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGT 603992 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 || || ||||| |||||||| || || ||||| || || || || || || ||| Sbjct 603991 CAGGCCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAA 603932 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--CTGTCA 24308 ||| || || ||||| || |||||||| |||| || |||||| || ||| || | Sbjct 603931 GAAGATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGGA 603872 Query 24309 TGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 || ||||| | ||||| || ||||| |||||| ||||| ||||| || || Sbjct 603871 TGAGATCCAGGAAAGCGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGC 603812 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 ||| || || || | | || |||| | ||||| || |||| | |||||| Sbjct 603811 ATTGAACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATA 603752 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 |||||| || || | |||||| || || || || || |||||||| || | ||||| || Sbjct 603751 CATTTCGGAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGT 603692 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 ||||| || || | |||||| || | | || || ||||| ||||| || || Sbjct 603691 GATCTGAACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGC 603632 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| || |||| || ||| || || | ||||| |||| || ||| Sbjct 603631 GGCAAAGAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCA 603572 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 || | | ||| || || | ||||||||| ||||| ||||| || || ||||| |||| Sbjct 603571 GTCCGTCAGATCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAGCCTCAGCCT 603513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593684893162080