Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq4042 114 1e-20 seq4563 113 4e-20 seq4720 86.0 5e-12 seq4475 84.2 2e-11 >seq4042 Length=640736 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| ||||||||| |||||||| || || || ||||| | | Sbjct 503609 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGAC 503668 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | ||||||||||||| || || || | || | | |||||| || ||| Sbjct 503669 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503728 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| || || ||||| | Sbjct 503729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACT 503788 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| ||| ||||||||||| || || || || || || |||||||| ||| Sbjct 503789 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATTG 503839 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| ||||||||| |||||||| || || || ||||| | | Sbjct 503153 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGAC 503212 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | ||||||||||||| || || || | || | | |||||| || ||| Sbjct 503213 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503272 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| || || ||||| Sbjct 503273 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCGGAAGGCTCAACC 503332 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||||||||| | || || ||||| || ||||| Sbjct 503333 TCCAAAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCAT 503379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||||||||| |||||||| ||||| || ||||| | || ||| | ||||| Sbjct 502940 AGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAGGTACGTCCGTCC 502999 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || || | || | | |||||| || ||| | || |||||||| Sbjct 503000 TCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCT 503059 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || || ||||| |||| || |||||| Sbjct 503060 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTC 503119 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || ||||| || ||||| Sbjct 503120 TTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 503151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| ||||||||| || ||||| || || || ||||| | | Sbjct 503381 CCACCACGCAGACGGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAGTCGGAC 503440 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | ||||||||||||| || || || | || | | |||||| || ||| Sbjct 503441 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503500 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| || || ||||| Sbjct 503501 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACC 503560 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||||||||| | || || ||||| || ||||| Sbjct 503561 TCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 503607 >seq4563 Length=5383265 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | || |||||||| || ||||| ||||| | | Sbjct 1837955 CCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1838014 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||| ||||| || | || || | |||||| || ||| Sbjct 1838015 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1838074 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||||| | ||| || || |||||| Sbjct 1838075 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 1838134 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | ||||| || || |||||||| Sbjct 1838135 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1838181 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||||||||||||| || ||||| |||||||| | Sbjct 4507141 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAG 4507200 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | |||||| || || Sbjct 4507201 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 4507260 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| ||| || | ||| |||||| || || Sbjct 4507261 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACC 4507320 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| || | || || || || || ||||| ||| Sbjct 4507321 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATGTTG 4507371 >seq4720 Length=6167446 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 29101 GGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCA 29160 |||||| || | ||| ||| |||||| | ||||||||||| ||||| || |||| | Sbjct 1311158 GGCGTGCTGTTCCCAGGGCTCGTCGTTGTCGTCCCAATCCTTGAGACCACCACCGCAACT 1311099 Query 29161 AAAGCACCGCGTCTTG-TCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCAACTCTT 29219 ||||| || | | | || || ||| || |||||||| || |||||||||| || | Sbjct 1311098 GAAGCAGCG-GACGCGATCTCCAACGCCCGTATAAAAGAAACCCGCCTCGGCCAGCTGGT 1311040 Query 29220 CGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGCAAACGCGCGGCTTCCG 29279 |||| || || | | |||||| || | |||||||||| ||||| | |||| Sbjct 1311039 GGGGCTTTTGCTTTAGATTTCTTGGCCACGCCTCGAAGGTGCGCAGTCGCGCTGATTCCA 1310980 Query 29280 TGGCATACTGCGGGTGCGCGG 29300 || ||||| |||| | ||| Sbjct 1310979 AGGTATACTCGGGGTACTCGG 1310959 >seq4475 Length=5362458 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| || | ||||||||||| || ||||| ||||| | Sbjct 1656472 TTCCTCCGCGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 1656531 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || | | || || ||||| || || || | || || | ||||||||| | Sbjct 1656532 ACAGTGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAG 1656591 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| ||||| | | | || || |||||| Sbjct 1656592 GGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 1656651 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || ||||||||||| || | || || || || || ||||| Sbjct 1656652 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||| | ||| |||| || | |||||||||||| || ||||| || || | Sbjct 1656702 CCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 1656761 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||| ||||| || | || || | |||||| || || Sbjct 1656762 AGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 1656821 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | | || || |||||| Sbjct 1656822 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACC 1656881 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 |||| || |||||||| || || || || || ||||| || ||||||||| || Sbjct 1656882 TCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTTGGAT 1656935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422233746479336