Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4471 452 4e-122 seq4563 136 4e-27 seq4042 123 3e-23 seq4475 118 1e-21 >seq4471 Length=3711889 Score = 452 bits (500), Expect = 4e-122 Identities = 557/751 (74%), Gaps = 18/751 (2%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| ||||| || |||||||| || ||||| ||||| ||||||||||| || |||| Sbjct 603513 AGGCTGAGGCTTCCTTCTGGACTGTGGAGGAAGTGGATCTGTCCAAGGATCTGACGGACT 603572 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 || | ||| | || ||| ||||||| || |||||| |||||||||||||| || |||| Sbjct 603573 GGCATCGCCTAAAGGACGACGAGCGTCACTTCATCTCACACGTGCTGGCCTTCTTTGCCG 603632 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAGGAGGTGCAGGTG 116833 | ||| || ||||| |||||||| ||||| ||||| ||| || |||||||| ||| | Sbjct 603633 CTTCCGATGGAATCGTGAACGAGAACCTGGTTGAGCGATTTAGC-CAGGAGGTTCAGATC 603691 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | ||||| || ||||||||||| || |||||||| ||||| ||||||||||| |||||| Sbjct 603692 ACTGAGGCACGCTGCTTCTACGGTTTCCAGATCGCAATGGAAAACGTGCACTCCGAAATG 603751 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA---AGCTCCGTTTGTTG 116950 ||| ||| |||||||| ||| | || | || | || || || |||| Sbjct 603752 TATAGTGTCCTGATCGACACATACATCCGAGATCCGCATCAGCGGGAGTACC---TGTTC 603808 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGAT 117009 || |||||||||||||||||| || |||| | ||||| || |||||||| |||||| Sbjct 603809 AATGCCATCGAGACGATGCCGGCTGT-AAAGCGCAAGGCGGACTGGGCGCTTTCCTGGAT 603867 Query 117010 CGCCGGCAGAGAGGCCGCC---TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 | | || || | ||| || || ||||| | | ||||| || ||||| ||||| Sbjct 603868 CTCATCCA---AGTCAGCCAATTTTGGAGAGCGAATTATCGCCTTTGCCGCCGTAGAGGG 603924 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | |||||||| ||||| |||||| | || || ||||| |||||||| ||||| ||||| Sbjct 603925 CATCTTCTTTAGCGGCAGCTTCGCCTCTATTTTCTGGCTAAAGAAACGTGGCCTGATGCC 603984 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 |||||||| ||| |||||| || || ||| ||||||| || |||| ||||||||||| Sbjct 603985 GGGCCTGACATTCTCCAACGAACTTATATCCCGGGACGAAGGCTTGCACTGCGACTTTGC 604044 Query 117187 CTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC-GAGCGCGGCGCGCGTCAGGGAGATCG 117245 | ||| ||||| |||| | ||||||||||| |||| | |||| ||| ||||| Sbjct 604045 CGTCTTGATGTTCCAGCACCTCGTGCAGCGACCAAAGCG-AGAGCGCATCATCGAGATTA 604103 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305 || ||||||||| ||||| |||||| ||||| || || || || || || || Sbjct 604104 TCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTTACAGATGCCCTTCCCGTAAACTTGA 604163 Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365 | || | |||||||| |||||| || ||||||||||| ||||| ||| | ||||| Sbjct 604164 TCGGCATGAATTGCGACCTGATGTCCCAGTACATCGAGTTTGTCGCAGACCGTTTGCTGG 604223 Query 117366 TCGAGCTGGTCGGCGCCAAGCACTACAACAC 117396 | ||||| | | | ||| ||||||||| Sbjct 604224 TGGAGCTTGGTGTTGGAAAGATCTACAACAC 604254 >seq4563 Length=5383265 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| ||||| ||||||||| | || || || | | Sbjct 1838181 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 1838122 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||||| | ||||| |||||||| ||| | || ||| Sbjct 1838121 GACACCATCGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 1838062 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| || |||||||||| Sbjct 1838061 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 1838002 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || || || Sbjct 1838001 ATCCAGAAGGAGTCGACCCTTCA 1837979 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||||||||| |||||||| | || |||||| | Sbjct 4507370 AACATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCT 4507311 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| |||| | || |||| |||||||| || || || | || Sbjct 4507310 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 4507251 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||||||| ||||| Sbjct 4507250 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 4507191 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||| ||| |||| |||| | ||| |||| Sbjct 4507190 AATATTCAGAAAGAGTCCACTTTGCACTTGGTGCTGCG 4507153 >seq4042 Length=640736 Score = 123 bits (136), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || | || ||||| ||||||||| | || || || | Sbjct 503838 AATATGCAAATTTTCGTGAAGACTTTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCT 503779 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| |||||| || || | ||||| ||||| |||||| | || Sbjct 503778 TCCGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGA 503720 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || | |||| ||| || || |||||||| |||| || ||| | |||||| Sbjct 503719 TCAGCAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTA 503660 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| |||||||||||| | || ||||| | ||| | || || | || ||| Sbjct 503659 CAATATCCAGAAGGAGTCTACTTTGCATTTGGTGCTCCGTCTGCGCGGAGGC 503608 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| | || || || | || Sbjct 503607 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 503548 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| |||||| | || || Sbjct 503547 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 503489 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || |||||||| |||| || ||| | ||||||||| Sbjct 503488 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAA 503429 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||||| | || ||||| Sbjct 503428 TATCCAGAAGGAATCTACTTTGCAT 503404 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || || | || Sbjct 503379 ATGCAGATCTTTGTGAAGACCCTTACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 503320 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| ||||| |||||| | || || Sbjct 503319 GACACCATCGAGAACGTT-AAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 503261 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || |||||||| |||| || ||| | ||||||||| Sbjct 503260 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAA 503201 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || ||||| | ||| | || || | || ||| Sbjct 503200 TATCCAGAAGGAGTCTACTTTGCATTTGGTGCTCCGTCTGCGCGGAGGC 503152 >seq4475 Length=5362458 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || || || ||||| |||||||| | || || || |||| | Sbjct 1656700 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTGGA-GCCATC 1656642 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | |||| || || | ||||| ||||| ||||| | ||||| Sbjct 1656641 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCA 1656582 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||||| || || | ||||| || ||||||||| Sbjct 1656581 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGCACACTGTCCGACTACAA 1656522 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 1656521 CATCCAGAAGGAGTCCACCCTTCA 1656498 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || | || || || |||||||| | || || || | Sbjct 1656931 AAAATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACTCTGGAGGTGGAGCCT 1656872 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | ||||| ||||| ||||| | || Sbjct 1656871 TCGGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCAGAT 1656812 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || || | ||||| || ||| ||| Sbjct 1656811 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACTCTTTCCGATTAC 1656752 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||| |||| || || Sbjct 1656751 AACATCCAGAAGGAGTCCACTCTTCA 1656726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515187346572960