Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4563 149 5e-31 seq4475 132 4e-26 seq4042 129 5e-25 seq4720 84.2 2e-11 >seq4563 Length=5383265 Score = 149 bits (164), Expect = 5e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| ||| || |||||| |||||| Sbjct 1837972 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 1838031 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| |||||||||||||| || || ||||||||||||||| Sbjct 1838032 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTG 1838091 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || | |||| |||||||| ||| ||||| | ||| | || || Sbjct 1838092 GATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 1838151 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||||| || ||||| || || || ||||||| Sbjct 1838152 GCCGGTGAGGGTTTTCACGAAGATTTGCATGG 1838183 Score = 118 bits (130), Expect = 9e-22 Identities = 674/1076 (63%), Gaps = 28/1076 (3%) Strand=Plus/Minus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 ||| ||||| |||| |||| | || || || ||||| |||| ||||||||| || || Sbjct 4594969 GTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCCGGT 4594910 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTC 132997 ||| || | ||| | ||||||||||||| || || || | || || Sbjct 4594909 TTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTGGCTC 4594850 Query 132998 GGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCAT 133057 || ||| || ||| | || |||||||||||||| || | | |||| || |||||||| Sbjct 4594849 TGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGCCAT 4594790 Query 133058 GTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTG 133117 || ||| | |||| ||| ||||| | || ||| | || | || | ||| Sbjct 4594789 TTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAACCTTCTG 4594730 Query 133118 TGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTC 133177 ||| || ||||| || || | || || | || | || | ||| || || Sbjct 4594729 TGGAATAGTCTCAATATTTTGAATTGAACCCCTGCTGGAAATGATTTGGTTCTTCATGTC 4594670 Query 133178 CGGAGTGT---AAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTG 133234 | || | | ||| || || | | | | | | || ||||| ||||| || Sbjct 4594669 ---ATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCACCTG 4594613 Query 133235 AAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTC 133294 || ||||| | ||||| | |||| ||| | ||| | || |||| ||||||||||| Sbjct 4594612 GAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGATTC 4594553 Query 133295 GTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTT 133354 ||||||||| | ||||| || || | || || ||||| || |||| || ||||| Sbjct 4594552 GTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAGTT 4594493 Query 133355 TCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCACAGATT-GTTGG 133413 | || |||| ||| ||||| || | | | ||||||||| || || || || Sbjct 4594492 CCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCGTCGG 4594433 Query 133414 AATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCACCG 133473 || | | ||| | ||| | |||||||| || |||| |||| Sbjct 4594432 AA----------------CTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCG 4594389 Query 133474 GACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTCCA 133533 | || || || | ||| || || || | ||| | || | || || || || |||| Sbjct 4594388 GGCTTCCCTCATAAGTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCA 4594329 Query 133534 AAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCTGGCATCGTCGCTAT 133593 |||| || ||||||| ||||| || | || | || || || || || || | Sbjct 4594328 AAGCCCCATAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGGCTCGCTTCATCACTTT 4594269 Query 133594 CGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGATG 133652 | || | || ||| | |||| || || || || || ||||| | |||| ||| | | Sbjct 4594268 CATATGGGA-ATCGCATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACG 4594210 Query 133653 GGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGATG 133712 || ||||| | |||| | || | ||| | | ||||| ||||| ||||| Sbjct 4594209 GGGCGATGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATT 4594150 Query 133713 ATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAACATAGTCAAAT 133772 |||||||||||||| | | | | || || | | || || | || || Sbjct 4594149 ATCTTGTTGAGATTTCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTAT 4594090 Query 133773 GTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTACAAACGGCC 133832 ||||| | || || ||| || |||| | ||||| || | |||||||| || Sbjct 4594089 GTCTTTTC--CGGTGT-GACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCA 4594033 Query 133833 GTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTG 133892 |||| | | | | | |||| ||| || || | ||| | ||| |||||||| |||||| Sbjct 4594032 ATCTCATCCGGGGAGGAGTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTG 4593973 Query 133893 CCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGG 133948 || | ||| | || || || | ||||| ||||||| | ||||| ||||| Sbjct 4593972 CCAACATTCTGCTGGTTACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGG 4593917 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || |||||||| ||||| || || || | ||||| ||| Sbjct 4507155 CAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAGAGGGTGCGGCCATC 4507214 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| |||| |||||||||||||| ||||| || || || ||||| Sbjct 4507215 TTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC 4507274 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || ||| || | ||||| || |||| |||||||| | || | || Sbjct 4507275 CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGT 4507334 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || || || ||||||||| Sbjct 4507335 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCATG 4507368 >seq4475 Length=5362458 Score = 132 bits (146), Expect = 4e-26 Identities = 175/242 (72%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || || | | |||||||| | || ||||| || || |||||||||||| Sbjct 1656700 TACCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGG 1656759 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| ||| |||||||| || || ||| |||| |||||||||||||| |||| Sbjct 1656760 AAAGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAG 1656819 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| || || || || | || | |||||||| ||| | Sbjct 1656820 GGATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCA 1656879 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA---TGGCTTATT 118746 |||| | || | || || || |||| || || ||||| ||||||| ||| ||||| Sbjct 1656880 CCTCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTTGGATTATT 1656939 Query 118747 CT 118748 || Sbjct 1656940 CT 1656941 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | ||||||||| | || ||||| || || |||||||| ||| | Sbjct 1656474 CCTCCGCGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1656533 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||| |||||||| ||||| ||| |||| ||||||||||| || ||||| Sbjct 1656534 AGTGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 1656593 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | || | |||||| | ||| || Sbjct 1656594 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACT 1656653 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || ||||| ||||| || || || || |||||||| Sbjct 1656654 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 >seq4042 Length=640736 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||||| | || ||||| || | |||||||| || ||||| ||||| ||| | Sbjct 502925 CCACCGCGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 502984 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| ||||| ||||||||| |||| | |||||||||||| || || Sbjct 502985 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503044 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||||||| || || || || | |||| |||||| | ||| ||| Sbjct 503045 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACC 503104 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | || |||||||| || || || ||||| ||||||||| || Sbjct 503105 TCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATGCCT 503155 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | |||||| || | |||||||| || || || ||||| ||| | Sbjct 503153 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGAC 503212 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| ||||| ||||||||| |||| | |||||||||||| || || Sbjct 503213 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503272 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || ||||| | |||| |||||| | ||| ||| Sbjct 503273 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCGGAAGGCTCAACC 503332 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | || |||||||| || || || ||||| ||||||||| Sbjct 503333 TCCAAAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATG 503380 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | |||||| || | |||||||| || || || ||||| ||| | Sbjct 503609 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGAC 503668 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| ||||| ||||||||| |||| | |||||||||||| || || Sbjct 503669 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503728 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | |||| |||||| | ||| || Sbjct 503729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACT 503788 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || ||||| |||| ||| || || ||||| ||||| Sbjct 503789 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 503835 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||| || || || || ||||| ||| || || || ||||| Sbjct 503399 ACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAGTCGGACAAGGTACGTCCGTCCTCC 503458 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||| | |||||||||||| || || || ||||||||||| Sbjct 503459 AGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 503518 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | || | || ||| Sbjct 503519 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTCTTG 503578 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| || || || ||||| ||||||||| || Sbjct 503579 CCGGTGAGGGTCTTCACAAAGATCTGCATGCCT 503611 >seq4720 Length=6167446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 47170 GCTTCAATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCGCCGTGATTG 47229 || |||||||| ||||||||||| | ||| || | || || ||| || ||||| | Sbjct 2981754 GCCTCAATGTTGCCCAGATCGCCCAGGTGGCGGTTTTCGTCGACGGGGGCACCGTGCTCC 2981813 Query 47230 CGGCCCAACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAAT 47289 ||| |||||||| | || || | |||| |||| || ||| | |||| |||||| Sbjct 2981814 TTGCCGTACGGATTAAAATGCGGTCCCGACGACATGCACCCATTGGTGTTGTCCCCGAAT 2981873 Query 47290 TCGTGCACGTGAAATCCGTGAAGCCCCTT 47318 || ||||| || |||||||| || ||||| Sbjct 2981874 TCATGCACATGGAATCCGTGCAGGCCCTT 2981902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433804248974632