Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq4681 111 3e-19 >seq4681 Length=7884553 Score = 111 bits (122), Expect = 3e-19 Identities = 199/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 189449 CTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGA 189508 || |||||| || | ||| |||| ||||| | || || || ||||| | ||| | || Sbjct 5741616 CTGTGGAACTCGGCGCAACTGCAACTGGTGCGCGAGGGCAAGATGCACGGCTTTCTGCGC 5741675 Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTAT 189568 ||||| ||||| || || || || || |||||| || |||||||| || || ||| Sbjct 5741676 ATGTACTGGGCAAAAAAAATTCTCGAGTGGACTGCCACTCCTGAAGAGGCGCTGGAGTAT 5741735 Query 189569 AGTATCTATTTGAACAACAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGG 189627 || | | ||| | |||||| || || || ||| || |||||||| || || || Sbjct 5741736 GCGATATTACTAAACGATAAGTACAGCCTCGATGG-ACGTGACCCTAACGGTTATGTTGG 5741794 Query 189628 TTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGG 189687 ||||||||||||||| |||| | ||||| | | ||||| || | || || || || Sbjct 5741795 GTGTATGTGGTCTATTGGCGGTGTGCACGACATGGGTTGGAAGGAGCGCCCTATTTTCGG 5741854 Query 189688 AAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 189735 |||| | | || ||||| ||| || | | | | || |||||||| Sbjct 5741855 AAAGGTCCGGTACATGAACTATCAGGGGTGTCGGCGAAAGTTTGATGT 5741902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923139723357840