Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4563 129 1e-24 seq4471 113 9e-20 >seq4563 Length=5383265 Score = 129 bits (142), Expect = 1e-24 Identities = 342/509 (67%), Gaps = 20/509 (4%) Strand=Plus/Plus Query 35290 GGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGG 35349 |||||| ||||||||||| || |||||| | || |||||| | | || | Sbjct 3136929 GGGCAAGACAGACGCCAAGCTGCTGCAGGCGAAGAACGTGCATATCTGGGATGGGAACAG 3136988 Query 35350 GTCGCGGGAATTTTTGGACAGTAGA-GGGTTATAC-GATAGAGCAGAGGGAGATTTGGGA 35407 | |||| || ||||||| || |||| | || || |||| | || || ||||| Sbjct 3136989 CACCAGGGAGTTCTTGGACA--AGCTGGGTCACACAGAGCGAGCCGTTGGCGACTTGGGT 3137046 Query 35408 CCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGAT 35467 || || ||||||||||| ||||| || |||||||| || || | | ||| |||| Sbjct 3137047 CCGGTGTACGGATTCCAGTGGCGGCACTTTGGTGCGGAGTACGGGAGCTGCGAAGACGAT 3137106 Query 35468 TATACTGGAAAGGGTATTGATCAATTG-GCCAATATACTAAAGACCCTGAGAGAA-AATC 35525 ||| | || ||||| || || |||||| | ||| | | | ||| | | |||| || | Sbjct 3137107 TATGCCGGCAAGGGCATCGACCAATTGCGTCAAGTGA-TCGACACCATTA-AGAATAACC 3137164 Query 35526 CAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTC 35585 | || || | || |||||| | || |||||||| |||| ||| ||||||| Sbjct 3137165 CTTCGGACAGGCGTATCATTATGTCAGCGTGGAATCCATTGGACATTCCAAAGATGGCTC 3137224 Query 35586 TTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAATGGA---GAATTG-----T 35636 |||| || |||||| || ||| | || || || || || | || ||| || | Sbjct 3137225 TTCCGCCGTGCCAC-TGCCTGGCGCAGTTCTACGT--CTCACAGACCCGAAATGAGCTTT 3137281 Query 35637 CGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCAT 35696 |||||||| | || || | |||| || | || ||||||||||||||||| || || | Sbjct 3137282 CGTGCCAGCTCTACCAAAGGAGCGCCGACATGGGCTTGGGCGTGCCCTTCAACATCGCCT 3137341 Query 35697 CATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTA 35756 | ||| | || || || | |||| ||| | || |||||| || ||||| || ||| Sbjct 3137342 CCTACGCCCTCCTTACCTACATGATCGCCCATGTGACGGGTCTGAAGCCGGGCGACTTTG 3137401 Query 35757 TCCTCACTCTTGGTGACGCACACATTTAT 35785 | | ||| | || ||| ||||| | ||| Sbjct 3137402 TGCACACCATGGGCGACACACACGTCTAT 3137430 >seq4471 Length=3711889 Score = 113 bits (124), Expect = 9e-20 Identities = 301/458 (66%), Gaps = 3/458 (1%) Strand=Plus/Plus Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960 |||| | || | |||| | |||||||| || || || || ||||||||||| || | Sbjct 603885 ATTTTGGAGAGCGAATTATCGCCTTTGCCGCCGTAGAGGGCATCTTCTTTAGCGGCAGCT 603944 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 |||| || ||||||||| | ||||| | || | |||| || || || | |||||| | Sbjct 603945 TCGCCTCTATTTTCTGGCTAAAGAAACGTGGCCTGATGCCGGGCCTGACATTCTCCAACG 604004 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGG 102080 | | || || |||||||||| | || |||||||||| | || |||| | | Sbjct 604005 AACTTATATCCCGGGACGAAGGCTTGCACTGCGACTTTGCCGTCTTGATGTTCCAGCA-C 604063 Query 102081 GTTTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAA 102140 | || | ||| | | |||| | || | || ||| || || || || | Sbjct 604064 CTCGTGCAGCGACCAAAGC--GAGAGCGCATCATCGAGATTATCCGCGACGCGGTGGCCA 604121 Query 102141 TTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGT 102200 |||| || || || || |||| | |||| || || || || | || ||||| ||| | Sbjct 604122 TTGAGCAGGAGTTCCTTACAGATGCCCTTCCCGTAAACTTGATCGGCATGAATTGCGACC 604181 Query 102201 TGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAA 102260 ||||| ||||||||| || ||||| ||||| | |||| || | || | | || Sbjct 604182 TGATGTCCCAGTACATCGAGTTTGTCGCAGACCGTTTGCTGGTGGAGCTTGGTGTTGGAA 604241 Query 102261 AGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGA 102320 || ||| || | ||||| ||| |||||||| | || || || || |||| Sbjct 604242 AGATCTACAACACCAAGAACCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGA 604301 Query 102321 CCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAACGT 102358 | ||||| || || |||| || | |||||| || ||| Sbjct 604302 CAAACTTCTTCGAGAAGAAGGTGGGCGAGTACCAGCGT 604339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989521289443430