Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq1821 237 5e-58 seq3517 149 2e-31 seq3189 113 2e-20 seq1292 102 3e-17 >seq1821 Length=3805 Score = 237 bits (262), Expect = 5e-58 Identities = 663/998 (66%), Gaps = 26/998 (3%) Strand=Plus/Plus Query 33405 TCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAG 33464 || ||||| |||||||| | ||||||| || ||| ||| || | | || |||||| Sbjct 2567 TCGGCTTCGGCGGGCGGCCTGTAGCCGATTGGCGCCAGCAGGCGTCGGTTATTATACCAG 2626 Query 33465 GCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGA 33524 | ||||||| || ||| || |||||| || | | |||||| || | | || Sbjct 2627 TCCACCCATTTGAGGGTTTCCCATTCGACCTGCGCCATGGATTTCCATGGCCCCAGATGA 2686 Query 33525 TGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTG 33584 || || | || | |||||| | ||||||||| || || ||||| ||||||||||||||| Sbjct 2687 TGGATGACCTCGGCCTTGTATAAGCCGTTGATGGTCTCCGCCAGTGCATTGTCGTAGCTG 2746 Query 33585 TCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGA 33644 || || |||||||||||| || ||| | ||| ||||| |||||| | || || Sbjct 2747 TCACCAACAGTGCCGACTGAGGCGTCTATGTCAGCCAGCGCCAGGCGTTCGGTATATCGG 2806 Query 33645 ATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCGGT 33704 || | ||||| || || | ||| |||||||| |||| | | || | | || Sbjct 2807 ATCGACAGATATTGTGATCCACGGTCCGAATGATGGATCAGCGCCTTGTTTCCCGCAGGC 2866 Query 33705 TGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACGAG 33764 | || | | || |||||||| || || || || || | |||||||| || | Sbjct 2867 TTTCGTTGCCAGATGGCCTGTTCAAGGGCGTCGAGCACGAACTGGGTGGTCATGGAAGTC 2926 Query 33765 CTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAGC 33824 ||| |||||| || || | |||||||||||| || || ||||| || || || | | Sbjct 2927 GAGACTTTCCAGCCCACGATCCTGCGGGCGAACACATCAATGACGAACGCTACATAGACC 2986 Query 33825 CAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGTCA 33884 ||| | ||| ||| |||||| ||||| ||||| ||||||||||| || || | || Sbjct 2987 ATGCCATTCCAGGTCTGGACATAGGTAAAGTCCGAGACCCAGAGCTGGTTGGGGCTCTCG 3046 Query 33885 GCCTTGAACTGCCGGTTGACTCGGTCCAGCGGGCGCGGCGCG-GTCACATCGGTAATCGT 33943 ||| ||||||||||||||| | || || |||| || ||| | | ||| | | || Sbjct 3047 GCCCGGAACTGCCGGTTGACCCTGT-CATCGGGACAGGGGCGCGCCGTATCCGGACGGGT 3105 Query 33944 CGTGCGAACACGCTTACCGCGAACTGCGCCACGCAAGCCCTGCAGCTTCATCAACCGTCC 34003 |||| || | || || | | | || || ||| | | ||||| || | Sbjct 3106 CGTGATGACCTTCCGGCCCCGGATTACACCCTTCAGACCCATCTTGTGCATCAGGCGCTC 3165 Query 34004 GACCGTGCAGCGTGCCACC-GTAATGCCTTCCCGGTTCA-TCTGCTTCCAGACCTTCGGC 34061 || ||||||||||| ||| || | || || || | || ||| | ||| ||||| || Sbjct 3166 AACAGTGCAGCGTGCAACCTGTCGT-CCCTCACGCTGCAGGCTG-TGCCACACCTTGCGC 3223 Query 34062 ACGCCGTAGACCTGCA-TGTTGGCCTGCCAGACACGCTTGATCTCCGGTTGCAAAAGCTC 34120 | || || | | ||| |||| ||||||||| || ||| | ||| || || || Sbjct 3224 GCACCATA-AACAGCACGGTTGTCCTGCCAGATCCGGCGGATAT---GTTCCATCAGTTC 3279 Query 34121 ---ATCGCGTTTCGCGCGGGCGCAGCGTTTCGACGGATCGCGAAGTTGTGCTGCATGGCG 34177 |||||| || || | || | | | |||||| | | || || || | Sbjct 3280 CCTATCGCGCCGGGCACGCGGGCTGGCCGTGGTCGGATCTCTTGCTATGGCCGCCTGATG 3339 Query 34178 TCGGTAGCCCGACGGGGCAATCCGCAAGACCTTG-CAGATCGGCTCGACCCCGAAGGTGT 34236 | |||||||||||| || ||| | | ||||| |||||||||||| | | Sbjct 3340 ATAAAACGTTGACGGGGCAATCGGC-AGAGCGCGACAGATTGGCTCGACCCCGTAATCGG 3398 Query 34237 CGCGATGCTGA--TCAATGAAGGCCTTCAGGACTT--GAAAC-GGCGGTCGAGCTCCGCC 34291 | || || || ||||| || || || | || ||||| ||||||||||||||||| Sbjct 3399 CACG--GCAGACTTCAATAAACGCGATC---ATTTGCGAAACGGGCGGTCGAGCTCCGCC 3453 Query 34292 TGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGACC 34351 || || ||| | || ||| || || ||||| |||| | | |||||||| |||| Sbjct 3454 TGTGCAAAATAAGCCGAGGCCTTCTTCAGGATCTCATTGGCCTGACGCAGTTCACGGACC 3513 Query 34352 TCGCGCTCCAAGGCTTTGATGCGTTCACGCTCGGCCGT 34389 || |||||||| || ||||| ||| | ||||| ||| Sbjct 3514 TCACGCTCCAACGCCTTGATCCGTGCCGTCTCGGTCGT 3551 >seq3517 Length=1047 Score = 149 bits (164), Expect = 2e-31 Identities = 277/404 (69%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 33402 GCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTAC 33461 ||||||||||| || || ||||| | || | | || ||||| | | ||| || Sbjct 395 GCCTCAGCTTCTGCTGGGGGGATGTTTCCAATGGAGGACAGGAGCCGCCGCTTATTGAAC 336 Query 33462 CAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC 33521 ||| ||||||||| || |||||||| || || | |||||| ||||||| || | || Sbjct 335 CAGTCGACCCATTTAAGTGTTGCCAGCTCAACAGCTTCCCTGTTTTTCCACGGCCCCTGC 276 Query 33522 CGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAG 33581 || | |||| ||| || ||||| || ||||| || || || ||||| || || || ||| Sbjct 275 CGGTAGATCAATTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCCAGGGCGTTATCATAG 216 Query 33582 CTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG 33641 || || || ||||| || | | | ||| || |||||||| | || ||||| Sbjct 215 GAATCCCCAACACTTCCGACAGAAGCAACAAGGCCCGCTTCAGCCAGTCTTTGCGTGTAG 156 Query 33642 CGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCC 33701 |||||| || |||||| | || | || |||||||| ||| | || | | Sbjct 155 CGAATGGACACATATTGACAGCCGCGATCTGAATGATGGGTCACTTTTCCCT------CA 102 Query 33702 GGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCG--TGGTCA-TC 33758 ||||| | | |||| || || ||||| |||||||| || ||||| | ||| || | Sbjct 101 GGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGTACGAAGTCGGTATGGGCAGTG 42 Query 33759 GACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTC 33802 ||||| ||| |||||||| |||||| ||||| || ||||| Sbjct 41 GACGA---GACGCGCCAGCCCACAATAACCCGGGCAAAGACGTC 1 >seq3189 Length=30760 Score = 113 bits (124), Expect = 2e-20 Identities = 173/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 33401 TGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTA 33460 |||||||||||| || |||||||| | || | | || ||||| ||| |||| | Sbjct 14549 TGCCTCAGCTTCTGCTGGCGGGATGTTTCCAATGGAGGACAGGAGCCGCCGATTGTTGAA 14490 Query 33461 CCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCG 33520 ||| ||| ||||| ||||||||||| || || | |||||| ||||||| || | | Sbjct 14489 CCAATCGATCCATTTAAGCGTTGCCAGCTCAACCGCTTCCCTGTTTTTCCATGGCCCCTG 14430 Query 33521 CCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTA 33580 ||||| |||| ||| || ||||| || || || || || || ||||| || ||||| || Sbjct 14429 CCGATAGATCATTTCGGTTTTGTAGAGACCATTTATGGTCTCAGCCAGAGCGTTGTCATA 14370 Query 33581 GCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTA 33640 | || || ||| ||||| || | ||| || || || ||||| | || |||| Sbjct 14369 GGAATCTCCAACGCTTCCGACAGAAGCAACGAGACCCGCTTCGGCCAGTCTTTGCGTGTA 14310 Query 33641 GCGAATG 33647 | |||| Sbjct 14309 ACCAATG 14303 >seq1292 Length=1913 Score = 102 bits (112), Expect = 3e-17 Identities = 170/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 33402 GCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTAC 33461 ||||||||||| || || ||||| | || | | || ||||| | | ||| || Sbjct 249 GCCTCAGCTTCTGCTGGGGGGATGTTTCCAATGGAGGACAGGAGCCGCCGCTTATTGAAC 190 Query 33462 CAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC 33521 ||| ||||||||| || |||||||| || || | |||||| ||||||| || | || Sbjct 189 CAGTCGACCCATTTAAGTGTTGCCAGCTCAACAGCTTCCCTGTTTTTCCATGGTCCCTGC 130 Query 33522 CGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAG 33581 || | |||| ||| || ||||| || ||||| || || || |||| || || || ||| Sbjct 129 CGGTAGATCAATTCGGTTTTGTAAAGTCCGTTAATGGTCTCCGCCAAAGCGTTATCATAG 70 Query 33582 CTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG 33641 || || || ||||| || | | | ||| || |||||||| | || ||||| Sbjct 69 GAATCCCCAACACTTCCGACAGAAGCAACAAGGCCCGCTTCAGCCAGTCTTTGCGTGTAG 10 Query 33642 CGAATG 33647 |||||| Sbjct 9 CGAATG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170661975793420