Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4563 356 3e-93 seq4471 233 2e-56 >seq4563 Length=5383265 Score = 356 bits (394), Expect = 3e-93 Identities = 1210/1875 (65%), Gaps = 18/1875 (1%) Strand=Plus/Minus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 |||||||| ||||| ||||||| | | || || || || || ||||| |||||||| Sbjct 4594972 CTTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCC 4594913 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| || || |||| |||||| || || ||| ||||| ||| | || Sbjct 4594912 GGTTTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTGG 4594853 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 ||||||| ||| ||||| | || ||||| ||||| || || || || | || || || Sbjct 4594852 CTCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGC 4594793 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274 |||||| || | | ||| | |||||||||| ||||| |||| || | | | Sbjct 4594792 CATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAACCTT 4594733 Query 62275 CTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTACCA-TAATCCTATTCTTG 62330 || ||||| || | |||| ||||| || || || || | | || ||||| Sbjct 4594732 CTG-TGGAATAGTCTCAATATTTTGAATTGAACC-CCTGCTGGAAATGATTTGGTTCTTC 4594675 Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 || ||||| | ||| || | ||| || || | || | | ||| ||||||| || Sbjct 4594674 ATGTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCACC 4594615 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 |||||||| ||||||| ||||| | || ||||||||| | |||||||| || | || Sbjct 4594614 TGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGAT 4594555 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 || || || |||| ||| |||||||| ||||| || |||||||| || |||| | Sbjct 4594554 TCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAG 4594495 Query 62511 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570 || | | ||||| | | || || ||||| | || ||| | ||| || | || | Sbjct 4594494 TTCCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCGTC 4594435 Query 62571 GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 62630 || || || || | ||| || || || | ||| |||| Sbjct 4594434 GGAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAA 4594375 Query 62631 GTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAA 62690 || || ||||| ||||| ||| ||||| || |||||| || || || || || || ||| Sbjct 4594374 GTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAA 4594315 Query 62691 ATGGTTTCAAAGATCTTCTTATTTA-GATCTTGTGCTTCCGGGCTATCAAATGGATAATT 62749 || ||||| || |||| || ||| | || | ||||| || ||| |||| | Sbjct 4594314 ATCGTTTCGAATATCTGCTGATTCAAGAGGCTC-GCTTCATCACTTTCATATGGGAATCG 4594256 Query 62750 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62809 | |||||| || || || || || || ||||| || || || | || | ||| ||| Sbjct 4594255 CATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAA 4594196 Query 62810 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62869 ||| || | || ||||| | |||||| | || ||||| || || || |||||||| Sbjct 4594195 ATTGGACTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATT 4594136 Query 62870 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TAT 62926 |||| || ||| || ||||| ||||| ||||| || | || | | Sbjct 4594135 TCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTATGTCTTTTCCGGTGT 4594076 Query 62927 TACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGC 62986 ||||||||||| | |||| ||||||| ||||| || || | ||||| | | Sbjct 4594075 GACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGA 4594016 Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 || | | || || ||||| | ||||| || || || || || | ||| || || || Sbjct 4594015 GTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTT 4593956 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 |||||| |||| || |||||||| | || || | ||| | |||||||| | || | Sbjct 4593955 ACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGC 4593896 Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-TTATAGATTTGTATCTCCTTTCTC 63165 ||| ||||| || ||| | | | ||||||| | | | | || | | || ||| Sbjct 4593895 TTCAATAATGGCGAACCATAAGGATTGAGCCTTAACTGTTCGGTTGGCACGGCC---CTC 4593839 Query 63166 TT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGG 63223 || || ||| ||| || ||| || || || ||||| |||| || | | ||| Sbjct 4593838 TTGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGG 4593779 Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63283 |||| | ||| ||||| | ||||| ||||| | ||| || |||||||| || || Sbjct 4593778 GCATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAG 4593719 Query 63284 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT 63343 |||||| ||||| | || ||| ||||||| | | || || || || || || || Sbjct 4593718 ATCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTT 4593659 Query 63344 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63403 || || || || || || | | | |||||| ||||| || |||| ||| || || | Sbjct 4593658 TTTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAA 4593599 Query 63404 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63463 |||| || || ||| ||||||||||| | || | || |||||| | || || Sbjct 4593598 GGCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGACCCT 4593539 Query 63464 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGC 63523 || ||| |||| | || || || | ||||| || ||| | || | || | || Sbjct 4593538 CAGCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTCCGCATATCGAAGTACCCTTTGC 4593479 Query 63524 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63583 || ||| | || ||| || || || || || |||||| || | || ||| | Sbjct 4593478 TCGGATACAATGAACATTTAGTCCAATGCCACCAGCAGATTTAGAAATCATGGCACATTG 4593419 Query 63584 TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 | | | | | | |||||||| ||| || | ||||| | | || ||||| Sbjct 4593418 CTCCACAGACTTAAAAATGCCTTCGATGGAGTCGGCTGTCATGGTTAAAAGGAAACATGA 4593359 Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 ||| | || | ||| | || | || ||| | || || || || || || || | Sbjct 4593358 AGATAGCTGCGGCCGATTTGTGGCTGCTGCAAAAAGCGTTGGTGATGCATGAGTGAAGTA 4593299 Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763 || || | ||||| ||||| || | || | ||| ||||| || ||||| Sbjct 4593298 CCGCTCTGACAAAAGATTATACGTTTCTACGGCCGCGTCGATATCTTCCCCGTGGATTCC 4593239 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823 | || || ||||| ||||| || || || | |||| | || || |||| | || || Sbjct 4593238 GATCGCAACGCGCATCAACATATGTTGCGGCCGTTCAGCGATCTTACCGTTTCTCTTTAA 4593179 Query 63824 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883 ||| || || ||| | |||||||| || ||||| || || |||||| || ||||| Sbjct 4593178 CAAATAAGAACGTTCGAGGGTTTTAAACCCGAAATAATTATACCCAAAGTCGCGATCGTA 4593119 Query 63884 AATAATAACCGAATT 63898 || ||| ||||| Sbjct 4593118 GATTATAGATGAATT 4593104 >seq4471 Length=3711889 Score = 233 bits (258), Expect = 2e-56 Identities = 554/835 (66%), Gaps = 3/835 (0%) Strand=Plus/Minus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 |||||||| ||||| || ||||| || ||||| || || || ||||| |||| Sbjct 604347 ACTCCCATACGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGC 604288 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || | |||||||||| || || || | ||||| || ||| || || | Sbjct 604287 GAGATCATCTCCATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGC 604228 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || | ||| | |||||||| || || || || ||||| || |||||||| Sbjct 604227 TCCACCAGCAAACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATG 604168 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || || | || || ||||| || | ||||| || || || ||||||| ||||| | Sbjct 604167 CCGATCAAGTTTACGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTCG 604108 Query 33522 GTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAA 33581 ||||| | | | ||| | ||| | || | | || | |||||||| Sbjct 604107 CGGATAATCTCGATGATGCGCTCTCGCTTTGGTCGCTGCACGAGGTGCTGGAACATCAAG 604048 Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || |||||||||| || ||||| | || | |||||| || || || || Sbjct 604047 ACGGCAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTCAGG 603988 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| |||||||| || || ||||| || || || ||||| ||| ||||||| Sbjct 603987 CCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAGAAG 603928 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGT- 33758 || || ||||| || |||||||| |||| || ||||||| || ||| || ||| Sbjct 603927 ATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGGATGAG 603868 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| || ||||| |||||| |||||||| || |||||||| Sbjct 603867 ATCCAGGAAAGCGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGCATTG 603808 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || || | | || |||| | || || ||||||| | |||||||||| Sbjct 603807 AACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATACATT 603748 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || | |||||| || || ||||| || |||||||| || | ||||| || ||| Sbjct 603747 TCGGAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGTGATC 603688 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || | |||||| || | | || || ||||| |||||||| || ||| Sbjct 603687 TGAACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGCGGCA 603628 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 34058 || || |||| || ||| || || | ||||| |||| || ||| || Sbjct 603627 AAGAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCAGTCC 603568 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | ||| || || | ||||||||| ||||| ||||| || || ||||| |||| Sbjct 603567 GTCAGATCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAGCCTCAGCCT 603513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629778661526880