Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4563 390 1e-103 seq4471 210 3e-49 >seq4563 Length=5383265 Score = 390 bits (432), Expect = 1e-103 Identities = 1211/1866 (65%), Gaps = 16/1866 (1%) Strand=Plus/Minus Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888 |||||||| ||||| ||||||| | | || || || || || ||||| |||||||| Sbjct 4594972 CTTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCC 4594913 Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948 ||||| || || |||| |||||| || || ||| ||||| ||| | || Sbjct 4594912 GGTTTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTGG 4594853 Query 64949 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 65008 ||||||| ||| ||||| | || ||||| ||||| || || || || | || || || Sbjct 4594852 CTCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGC 4594793 Query 65009 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 65067 |||||| || | | ||| | |||||||||| ||||| |||| || | | | Sbjct 4594792 CATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAACCTT 4594733 Query 65068 CTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCA-TAATCCTATTCTTG 65123 || ||||| || | |||| ||||| || || || ||| | | || ||||| Sbjct 4594732 CTG-TGGAATAGTCTCAATATTTTGAATTGAACC-CCTGCTGGAAATGATTTGGTTCTTC 4594675 Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || ||||| | ||| || | ||| || || | || | | ||| | ||||| || Sbjct 4594674 ATGTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCACC 4594615 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 || ||||| ||||||| ||||| | || ||||||||| | |||||||| || | ||| Sbjct 4594614 TGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGAT 4594555 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 65303 || || || |||| ||| |||||||| ||||| || |||||||| || |||| | Sbjct 4594554 TCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAG 4594495 Query 65304 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363 || | | ||||| | | || || ||||| || ||| | ||| || | || | Sbjct 4594494 TTCCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCGTC 4594435 Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 65423 || || || | ||| || || || | ||| |||| Sbjct 4594434 GGAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAA 4594375 Query 65424 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 65483 || |||||||| ||||| ||| ||||| ||||||||| || || || || || || ||| Sbjct 4594374 GTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAA 4594315 Query 65484 ATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGGATAATT 65542 || |||||||| |||| || ||| | || | ||||| || ||| |||| | Sbjct 4594314 ATCGTTTCGAATATCTGCTGATTCAAGAGGCTC-GCTTCATCACTTTCATATGGGAATCG 4594256 Query 65543 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 65602 | |||||| || || || || || || ||||| || || || | || | ||| ||| Sbjct 4594255 CATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAA 4594196 Query 65603 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662 ||| || | || ||||| | |||||| | || ||||| || || || |||||||| Sbjct 4594195 ATTGGACTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATT 4594136 Query 65663 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATC---TAT 65719 |||| || ||| || ||||| ||||| ||||| || || || | | Sbjct 4594135 TCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTATGTCTTTTCCGGTGT 4594076 Query 65720 TACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 65779 ||||||||||| | |||| ||||||| |||||||| || | ||||| | | Sbjct 4594075 GACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGA 4594016 Query 65780 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 65839 || | | || || ||||| | ||||| || || ||||| || | ||| || || || Sbjct 4594015 GTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTT 4593956 Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 |||||| |||| || |||||||| | || || | ||| | |||||||| | || | Sbjct 4593955 ACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGC 4593896 Query 65900 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCT 65959 ||| ||||| || ||| | | | ||||||| | | | ||| | | |||| Sbjct 4593895 TTCAATAATGGCGAACCATAAGGATTGAGCCTTAACTGTTCGGTTG--GCACGGCCCTCT 4593838 Query 65960 T--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 66017 | || ||| ||| || ||| || || || ||||| |||| || | ||||| Sbjct 4593837 TGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGG 4593778 Query 66018 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 66077 |||| | ||| ||||| | ||||| ||||| | ||| || |||||||| || ||| Sbjct 4593777 CATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGA 4593718 Query 66078 TCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137 ||||| ||||| | || ||| | ||||| || | || || || || || || || Sbjct 4593717 TCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTTT 4593658 Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197 || || || || || || | | | |||| | ||||| || |||| ||| || || | Sbjct 4593657 TTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAAG 4593598 Query 66198 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257 |||| || || ||| ||||||||||| | || | || |||||| | || ||| Sbjct 4593597 GCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGACCCTC 4593538 Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317 | ||| |||| | |||||||| || ||||| || ||| | || | | || |||| Sbjct 4593537 AGCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTCCGCATATCGAAGTACCCTTTGCT 4593478 Query 66318 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 66377 || ||| | || ||| || || || || || |||||| || | || ||| | Sbjct 4593477 CGGATACAATGAACATTTAGTCCAATGCCACCAGCAGATTTAGAAATCATGGCACATTGC 4593418 Query 66378 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 | | | | | | ||||| || || || | ||||| | | || ||||| | Sbjct 4593417 TCCACAGACTTAAAAATGCCTTCGATGGAGTCGGCTGTCATGGTTAAAAGGAAACATGAA 4593358 Query 66438 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 66497 || | || | ||| | || | || ||| | || || || || || || || | Sbjct 4593357 GATAGCTGCGGCCGATTTGTGGCTGCTGCAAAAAGCGTTGGTGATGCATGAGTGAAGTAC 4593298 Query 66498 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCT 66557 || || | ||||| ||||| || | || | ||| ||||| || ||||| Sbjct 4593297 CGCTCTGACAAAAGATTATACGTTTCTACGGCCGCGTCGATATCTTCCCCGTGGATTCCG 4593238 Query 66558 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 66617 | || || ||||| ||||| || || || | |||| ||||||| |||| | || ||| Sbjct 4593237 ATCGCAACGCGCATCAACATATGTTGCGGCCGTTCAGCGATCTTACCGTTTCTCTTTAAC 4593178 Query 66618 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 66677 || || || ||| | |||||||| || ||||| || || |||||| || ||||| Sbjct 4593177 AAATAAGAACGTTCGAGGGTTTTAAACCCGAAATAATTATACCCAAAGTCGCGATCGTAG 4593118 Query 66678 ATAATA 66683 || ||| Sbjct 4593117 ATTATA 4593112 >seq4471 Length=3711889 Score = 210 bits (232), Expect = 3e-49 Identities = 551/836 (66%), Gaps = 5/836 (1%) Strand=Plus/Minus Query 35858 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 35917 |||||||| ||||| || ||||| || ||||| || || || || || || | Sbjct 604347 ACTCCCATACGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGC 604288 Query 35918 GATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAAT 35977 || || | |||||||||| ||| || || | || || || ||| || || | Sbjct 604287 GAGATCATCTCCATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGC 604228 Query 35978 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 36037 || | ||| | ||||||||||| || || || ||||| || |||||||| Sbjct 604227 TCCACCAGCAAACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATG 604168 Query 36038 CCTAT-AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 36096 || || ||||||| | ||||| || | ||||| || || || ||||| | |||||||| Sbjct 604167 CCGATCAAGTTTA-CGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTC 604109 Query 36097 TGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAA 36156 ||||| || | ||| | ||| | | || | || | |||||||| Sbjct 604108 GCGGATAATCTCGATGATGCGCTCTCGCTTTGGTCGCTGCACGAGGTGCTGGAACATCAA 604049 Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 || || |||||||| | || ||||| | || | ||||||||| || || || Sbjct 604048 GACGGCAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTCAG 603989 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| |||||||| || || ||||| || || || || || || |||||| Sbjct 603988 GCCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAGAA 603929 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATGT 36334 || || ||||| || |||||||| |||| || ||||||| || ||| ||| ||| Sbjct 603928 GATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGGATGA 603869 Query 36335 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | ||||| || ||||| |||||| ||||| ||||| || ||||| Sbjct 603868 GATCCAGGAAAGCGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGCATT 603809 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 || || || | | || |||| | ||||| || |||| | ||||||||| Sbjct 603808 GAACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATACAT 603749 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 ||| || || | |||||| || || || || || |||||||| || | ||||| || || Sbjct 603748 TTCGGAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGTGAT 603689 Query 36514 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 ||| || || | |||||| || | | || || ||||| ||||| || || || Sbjct 603688 CTGAACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGCGGC 603629 Query 36574 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATC 36633 ||| || |||| || ||| || || | |||| |||| || ||| || Sbjct 603628 AAAGAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCAGTC 603569 Query 36634 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | | ||| || || | ||||||||| ||||| ||||| || || ||||| |||| Sbjct 603568 CGTCAGATCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAGCCTCAGCCT 603513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658132108466640