Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4563 116 4e-21 seq4475 109 5e-19 seq4471 93.3 4e-14 seq4042 91.5 1e-13 >seq4563 Length=5383265 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || || ||||| || ||| | Sbjct 1837955 CCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1838014 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || || ||||| || || || |||||||||| |||||||| || || Sbjct 1838015 AGAGTGCGTCCA-TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1838073 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| |||||| || | | || | ||||| | |||||||| Sbjct 1838074 AATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCAC 1838133 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||| | ||||| ||||| |||||||| Sbjct 1838134 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1838181 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||| | || |||||||| ||||| ||||| || Sbjct 4507141 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAG 4507200 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || ||||| |||||||||| |||||||| ||||| Sbjct 4507201 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 4507260 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | ||| | || || | || || || Sbjct 4507261 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 4507319 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | |||||||| || | || || ||||| || ||||| Sbjct 4507320 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 4507367 >seq4475 Length=5362458 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || || ||||| || ||| | Sbjct 1656474 CCTCCGCGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1656533 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||||||||| || || || |||||||||| ||||| || ||||| Sbjct 1656534 AGTGTGCGTCCA-TCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGG 1656592 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||||| |||||||| Sbjct 1656593 GATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCAC 1656652 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | |||||||| |||| || || ||||| || |||||| || Sbjct 1656653 TTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATACCT 1656704 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || ||||| | ||| ||||||| || ||||| || || ||||| |||||| Sbjct 1656702 CCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 1656761 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||||||||| || || || |||||||||| |||||||| ||||| Sbjct 1656762 AGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 1656821 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||| | ||||||||| Sbjct 1656822 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACC 1656881 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || ||||| || || || || || ||||| Sbjct 1656882 TCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 1656928 >seq4471 Length=3711889 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 || || || | |||||| | ||||| |||| || || | |||||| ||| | ||| Sbjct 604109 GACGCGGTGGCCATTGAGCAGGAGTTCCTTACAGATGCCCTTCCCGTAAACTTGATCGGC 604168 Query 52897 ATGAAC-GCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCA 52955 ||||| |||||| |||||| | |||||||||||||||| || ||| | || || || | Sbjct 604169 ATGAATTGCGACC-TGATGTCCCAGTACATCGAGTTTGTCGCAGACCGTTTGCTGGTGGA 604227 Query 52956 GCTCGGTCAGCCGAAATA-CTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATAT 53014 ||| ||| |||| | ||| || | ||||| || || ||| | | || | Sbjct 604228 GCTTGGT-GTTGGAAAGATCTACAACACCAAGAACCCTTTCAATTTCATGGAGATGATCT 604286 Query 53015 CGCTCGAGGGCAAAACAAACTTTTTCGAG-AGACGTGTGGGCGAGTAC 53061 |||| || || || |||||||| |||||| ||| | |||||||||||| Sbjct 604287 CGCTGGACGGAAAGACAAACTTCTTCGAGAAGAAG-GTGGGCGAGTAC 604333 >seq4042 Length=640736 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| ||||| || || || | |||||||| || ||||| || || ||| Sbjct 502924 GCCACCGCGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGA 502983 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || ||||| || ||||| |||||| ||| |||||||| || || Sbjct 502984 CAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 503043 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||||| ||||| || Sbjct 503044 GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAAC 503103 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | || || || || || ||||| Sbjct 503104 CTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 503151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496033330843200