Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4042 111 1e-19 seq4475 82.4 6e-11 >seq4042 Length=640736 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| ||||| | | ||||||||| | ||| |||||| || | |||||| ||||| Sbjct 503608 GCCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGA 503667 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| |||||| |||| |||| || || || || || ||||| ||||| ||||| | || Sbjct 503668 CAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 503727 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | ||||| | | | |||||| || ||| || Sbjct 503728 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAAC 503787 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | ||| ||||| ||||||||||| || Sbjct 503788 TTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATT 503838 >seq4475 Length=5362458 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||||| | | ||||| || | |||| |||||| || | ||||||||||| Sbjct 1656702 CCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 1656761 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || |||||||| || |||| ||||| ||||| | || Sbjct 1656762 AGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 1656821 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | || || | ||| ||||| || ||| || Sbjct 1656822 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACC 1656881 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || ||||| || | || |||||||| || |||||||| Sbjct 1656882 TCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1656931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381346611278868