Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4563 387 2e-102 seq4471 221 2e-52 >seq4563 Length=5383265 Score = 387 bits (428), Expect = 2e-102 Identities = 1220/1880 (65%), Gaps = 22/1880 (1%) Strand=Plus/Minus Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACA 70846 || |||||||| || |||||||||| | | || |||||| || || ||||| |||| Sbjct 4594975 TTTCTTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTT-GTCCGCAGATAATACA 4594917 Query 70847 TGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGC 70906 | || ||||| || || |||| |||||| || || ||| ||||| |||| Sbjct 4594916 TTCCGGTTTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGT 4594857 Query 70907 TAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTG 70966 | || || |||| || ||||| | |||||||| ||||| || || || || | || | Sbjct 4594856 TTGGCTCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAG 4594797 Query 70967 CAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTA 71025 | |||||||| || | | ||| | |||||||||| ||||| |||| || | | Sbjct 4594796 CGGCCATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAA 4594737 Query 71026 ATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCAA-TAATCCTATT 71081 ||| ||||| || | |||| ||||| || || || ||| || | || || Sbjct 4594736 CCTTCTG-TGGAATAGTCTCAATATTTTGAATTGAACC-CCTGCTGGAAATGATTTGGTT 4594679 Query 71082 TTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 71141 || || || || | ||| || | ||| || || | || | | |||| | ||||| Sbjct 4594678 CTTCATGTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAAC 4594619 Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 || || ||||| ||||||| ||||| | || ||||||||| | |||||||| || | Sbjct 4594618 CACCTGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAA 4594559 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 || || || || |||| ||| |||||||| ||||| || |||||||| || |||| || Sbjct 4594558 AGATTCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAG 4594499 Query 71262 ACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 || | | ||| || || || ||||| || ||| | ||| || | Sbjct 4594498 GGAGTTCCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTT 4594439 Query 71322 CGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGC 71381 || || || || || || || | ||| | Sbjct 4594438 CGTCGGAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTC 4594379 Query 71382 ATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATA 71441 ||| || |||||||| ||||| | | |||| ||||||||| || || || || ||||| Sbjct 4594378 ATAAGTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATA 4594319 Query 71442 ATAAATGGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||| |||||||| |||| || ||| | || | ||||| || ||| |||| Sbjct 4594318 GTAAATCGTTTCGAATATCTGCTGATTCAAGAGGCTC-GCTTCATCACTTTCATATGGGA 4594260 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | |||||| || || || || || || ||||| || || || | || | || | Sbjct 4594259 ATCGCATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCC 4594200 Query 71561 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 || ||| || | || ||||| | |||||| | || ||||| || || || |||| Sbjct 4594199 TCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGA 4594140 Query 71621 GATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC-- 71678 |||||||| | ||| || ||||||||||| ||||| || || || Sbjct 4594139 GATTTCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTATGTCTTTTCCG 4594080 Query 71679 -TATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 71737 | | ||||||| ||| | |||| ||||||| |||||||| || | ||||| | Sbjct 4594079 GTGTGACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGG 4594020 Query 71738 CGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 71797 || || | | |||||| ||||| | ||||| || || ||||| || | ||| || | Sbjct 4594019 AGGAGTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCT 4593960 Query 71798 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCT 71857 | |||||||| |||| || |||||||| | || ||| ||||| | |||||||| | | Sbjct 4593959 GGTTACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTT 4593900 Query 71858 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTT 71917 | | ||| ||||| || ||| | | | ||||||| | | ||| | | | Sbjct 4593899 GTGCTTCAATAATGGCGAACCATAAGGATTGAGCCTTAA--CTGTTCGGTTGGCACGGCC 4593842 Query 71918 CTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCC 71975 ||||| || |||| |||||| ||| || || || ||||| ||| || | || Sbjct 4593841 CTCTTGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCC 4593782 Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035 ||| |||| | ||| ||||| | ||||| ||||||| | | ||| |||||||| || Sbjct 4593781 AGGGCATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAA 4593722 Query 72036 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 |||||||| ||||| | || ||| ||||||| || | || ||| || || || || Sbjct 4593721 AAGATCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGT 4593662 Query 72096 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 || || || || || || || | | | |||||| ||||| || |||| ||| || || Sbjct 4593661 GTTTTTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGC 4593602 Query 72156 CATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 72215 | |||| || || ||| ||||||||||| | || | || |||||| | || Sbjct 4593601 AAAGGCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGAC 4593542 Query 72216 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 72275 |||| ||| |||| | |||||||| | ||||| || ||| | || | | || | Sbjct 4593541 CCTCAGCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTCCGCATATCGAAGTACCCTT 4593482 Query 72276 GGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 || || || | || ||| ||| || || || || || |||||| || | || Sbjct 4593481 TGCTCGGATACAATGAACATT--TAGTCCAATGCCACCAGCAGATTTAGAAATCATGGCA 4593424 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 ||| | | | | | | | ||||| || || || | ||||| | | || ||| Sbjct 4593423 CATTGCTCCACAGACTTAAAAATGCCTTCGATGGAGTCGGCTGTCATGGTTAAAAGGAAA 4593364 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 || ||| | || | ||| | || | || ||| | || || || || || || Sbjct 4593363 CATGAAGATAGCTGCGGCCGATTTGTGGCTGCTGCAAAAAGCGTTGGTGATGCATGAGTG 4593304 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGT 72513 || | || |||| ||||| ||||| || | || | || ||||| || Sbjct 4593303 AAGTACCGCTCTGACAAAAGATTATACGTTTCTACGGCCGCGTCGATATCTTCCCCGTGG 4593244 Query 72514 ATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATT 72573 ||||| | ||| || ||||| |||||||| || || | |||| ||||||| ||| | Sbjct 4593243 ATTCCGATCGCAACGCGCATCAACATATGTTGCGGCCGTTCAGCGATCTTACCGTTTCTC 4593184 Query 72574 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 72633 || ||||| || || ||| | |||||||| || ||||| || || |||||| || Sbjct 4593183 TTTAACAAATAAGAACGTTCGAGGGTTTTAAACCCGAAATAATTATACCCAAAGTCGCGA 4593124 Query 72634 TCGTAAATAATAACCGAATT 72653 ||||| || ||| ||||| Sbjct 4593123 TCGTAGATTATAGATGAATT 4593104 >seq4471 Length=3711889 Score = 221 bits (244), Expect = 2e-52 Identities = 556/838 (66%), Gaps = 9/838 (1%) Strand=Plus/Minus Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824 |||||||| ||||| || ||||| || ||||| || || |||||||| |||| Sbjct 604347 ACTCCCATACGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGC 604288 Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884 || || | |||||||||| || || || | || || || ||| || || | Sbjct 604287 GAGATCATCTCCATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGC 604228 Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944 || | ||| | ||||||| || || || || ||||| || |||||||| Sbjct 604227 TCCACCAGCAAACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATG 604168 Query 41945 CCTAT-AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 42003 || || ||||||| | ||||| || | ||||| || || || ||||| | |||||||| Sbjct 604167 CCGATCAAGTTTA-CGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTC 604109 Query 42004 TGTTATAATA--GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATC 42061 ||||| ||| | | | || | ||| | | || | || | |||||| Sbjct 604108 GCGGATAATCTCGATGATGCGCTCTCGCT--TTGGTCGCTGCACGAGGTGCTGGAACATC 604051 Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 || || || |||||||||| || || || | || | ||||||||| || || Sbjct 604050 AAGACGGCAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTC 603991 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAG 42181 || || ||||| |||||||| || || ||||| || ||||| || || || |||| Sbjct 603990 AGGCCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAG 603931 Query 42182 AAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCAT 42239 ||||| || ||||| || |||||||| |||| || ||||||| || ||| ||| || Sbjct 603930 AAGATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGGAT 603871 Query 42240 GT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 42298 | ||||| | ||||| || ||||| |||||| |||||||| || |||||| Sbjct 603870 GAGATCCAGGAAAGCGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGCA 603811 Query 42299 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATAC 42358 || || || || | | || |||| | ||||| ||||||| | ||||||| Sbjct 603810 TTGAACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATAC 603751 Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418 ||||| || || | |||||| || || ||||| || |||||||| || | ||||| || Sbjct 603750 ATTTCGGAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGTG 603691 Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | ||| || || | |||||| ||| | | || |||||||| ||||| || || Sbjct 603690 ATCTGAACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGCG 603631 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAA 42538 ||||| || |||| || ||| || || | ||||| ||| || ||| Sbjct 603630 GCAAAGAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCAG 603571 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 || | | ||| || || | ||| ||||| || || ||||| || || || || |||| Sbjct 603570 TCCGTCAGATCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAGCCTCAGCCT 603513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671097706818960