Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4471 289 4e-73 seq4042 176 7e-39 seq4563 154 2e-32 seq2267 89.7 8e-13 >seq4471 Length=3711889 Score = 289 bits (320), Expect = 4e-73 Identities = 577/845 (68%), Gaps = 36/845 (4%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| |||| ||||| ||||| || || || || |||||||||||||| ||| || | Sbjct 603513 AGGCTGAGGCTTCCTTCTGGACTGTGGAGGAAGTGGATCTGTCCAAGGATCTGACGGACT 603572 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 || | ||| | | || ||||| | || || || ||| | |||||||||||| Sbjct 603573 GGCA---TCGCCTAAAGGACGACGAGCGTCACTTCATCTCACACGTGCTGGCCTTCTTTG 603629 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACGATTCTCTCAAGAGTTGACC 125216 ||| |||||||||||||| ||||| || ||| |||| ||||| || ||| | Sbjct 603630 CCGCTTCCGATGGAATCGTGAACGAGAACCTGGTTGAG-CGATTTAGCCAGGAGGTTCAG 603688 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 || | |||| ||||| ||||| ||||| ||| || || ||||||||||| ||| Sbjct 603689 ATCACTGAGGCACGCTGCTTCTACGGTTTCCAGATCGCAATGGAAAACGTGCACTCCGAA 603748 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAAC---GTAAACACATGCTC 125333 ||||| | ||||| |||| ||||| || |||||||| | | | || || || Sbjct 603749 ATGTATAGTGTCCTGATCGACACATACATCCGAGATCCGCATCAGCGGGAGTACCTGTTC 603808 Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCG 125389 || || ||||| ||| ||||| || ||||| ||||| | |||| | || Sbjct 603809 ---AATGCCATCGAGACGATGCCGGCT----GTAAAGCGCAAGGCGGACTGGGCGCTTTC 603861 Query 125390 GTGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGT 125446 |||||| | | |||||| | | | || || | | || || |||||||| Sbjct 603862 CTGGATC--TCATC-CAAGTCAGCCAATTTTGGAGAGCGAATTATCGCCTTTGCCGCCGT 603918 Query 125447 AGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506 |||||||||||||||| || || || || | || || ||||| ||||| || || || Sbjct 603919 AGAGGGCATCTTCTTTAGCGGCAGCTTCGCCTCTATTTTCTGGCTAAAGAAACGTGGCCT 603978 Query 125507 CATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGA 125566 ||||| || ||||| | ||||| ||||||| || ||||| ||| | ||||| || Sbjct 603979 GATGCCGGGCCTGACATTCTCCAACGAACTTATATCCCGGGACGAAGGCTTGCACTGCGA 604038 Query 125567 CTTTGCCATTCTACTGTTTC-GCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAA 125625 ||||||| | | |||| | ||| || ||| | | | || | | || | | Sbjct 604039 CTTTGCCGTCTTGATGTTCCAGCACCT-----CGTGCAGCGACCAAAGCGAGAGCGCA-- 604091 Query 125626 AGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCC 125685 ||||| | ||| | ||| || ||| || || || ||||| || || || ||| Sbjct 604092 ---TCATCGAGATTATCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTTACAGATGCCC 604148 Query 125686 TACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGG 125745 | || || | | |||| |||||||| ||| | || |||| | ||||||| |||||||| | Sbjct 604149 TTCCCGTAAACTTGATCGGCATGAATTGCGACCTGATGTCCCAGTACATCGAGTTTGTCG 604208 Query 125746 CAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTG 125805 |||| ||| | ||| ||| | || | ||||| |||||| ||||||| || || Sbjct 604209 CAGACCGTTTGCTGGTGGAGCTTGGTGTTGGAAAGATCTACAACACCAAGAACCCTTTCA 604268 Query 125806 ATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCG 125865 |||||||| | || || || || || ||||| ||||| |||||||||||||| ||| Sbjct 604269 ATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTCGAGAAGAAGGTGGGCG 604328 Query 125866 AGTAC 125870 ||||| Sbjct 604329 AGTAC 604333 >seq4042 Length=640736 Score = 176 bits (194), Expect = 7e-39 Identities = 380/569 (67%), Gaps = 12/569 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| || |||||||||||||||| || || || || || || |||||| Sbjct 131012 TTGCGGAAGAAGATCACACCGGCTCGAGGACCTCGAAGGGTTTTATGGGTGGTGGTGGTC 131071 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| || ||||| || ||||| | | | | || | | || |||| Sbjct 131072 ACAATGTCGGCGTATTCAAATGGCGATGGAATCAATCCGGCGGCCACAATACCAGCAACA 131131 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || ||||||||||||| ||| || | ||||| |||| |||||||| | Sbjct 131132 TGAGCCATATCGGCCATCAAATAGGCACCCACATCATCGCAGATCTGACGGAATCGGGCA 131191 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| | || | |||||| | ||||||| ||||| | | || |||| Sbjct 131192 TAGTCCAGCAGTCGGGAATAGCACGAGATGCCGGCAATGATGATCTGCGGCCGGAATGTC 131251 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||||| |||||| | || | ||||| | || ||| |||| || | ||| |||||| Sbjct 131252 TTGGCTGCCTCGGCCAACTTATCGTAGTCAATGATTCCCGTCTCCGGGTTCACTTTGTAC 131311 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| ||||| || | ||||| || || | || ||| ||| || Sbjct 131312 GGCATGCTCTCGAAGAAAATCGATGTGGCCGAGATTTTCTTGGTGGGCGTGAAGAAACCA 131371 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 || || | || || || ||||||||||| || |||||||| | | || || | Sbjct 131372 TGGGTTAAATGACCACCATCGGGCAGATCCAGACCCATGATCCGGTCATGGGGACGGCAG 131431 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || ||||| || || | |||||| || || || || || || ||| || ||| Sbjct 131432 ACGCCCGTGTAGACAGCCAGATTGGCCGGAGATCCGGAATAGGGCTGGACATTGACGCCC 131491 Query 127570 CATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGATG 127629 || | | ||| | || ||||| | | | | ||| | ||| || || || |||||| Sbjct 131492 CACTTGTCCTCATCCAGGTTGAAGAGTTCGCGTCCTCGTTTCTGGGCAAGAAGCTCGATG 131551 Query 127630 CGATCGATAAACTCGTTACCACCATAGTA 127658 | || || |||||||| ||||| ||||| Sbjct 131552 CAGTCAATGAACTCGTTGCCACCGTAGTA 131580 >seq4563 Length=5383265 Score = 154 bits (170), Expect = 2e-32 Identities = 320/466 (69%), Gaps = 18/466 (4%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| |||| || |||||||||||||||||| |||||| || | |||| | | Sbjct 3137035 GGCGACTTGGGTCCGGTGTACGGATTCCAGTGGCGGCACTTTGGTGCGGAGTACGGGAGC 3137094 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184 ||||| ||| || ||| | || |||| | || ||||||| | ||| | || ||||| Sbjct 3137095 TGCGAAGAC-GATTATGCCGGCAAGGGCATCGACCAATTGC-GTCAAGTGATCGACACCA 3137152 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC--TGCAGATTT 70242 | |||| || || | || ||| | ||| | |||| | |||||||| || | ||| Sbjct 3137153 TTAAGAATAACCCTTCGGACAGGCGTATCATTATGTCAGCGTGGAATCCATTGGACATT- 3137211 Query 70243 GCACCAAA--TGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC-TCGTAC-GATG 70298 ||||| |||| || || ||||| ||||| |||| ||||| ||| || || || Sbjct 3137212 ---CCAAAGATGGCTCTTCCGCCGTGCCACTGCCTGGCGCAGTTCTACGTCTCACAGACC 3137268 Query 70299 GCAAAT----TGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCC 70354 |||| | || ||| | || || ||||| |||||||||||| | || || ||| Sbjct 3137269 CGAAATGAGCTTTCGTGCCAGCTCTACCAAAGGAGCGCCGACATGGGCTTGGGCGTGCCC 3137328 Query 70355 TTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAA 70414 || ||||| || ||| | | | || ||||||| || || | || || ||||| Sbjct 3137329 TTCAACATCGCCTCCTACGCCCTCCTTACCTACATGATCGCCCATGTGACGGGTCTGAAG 3137388 Query 70415 GCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCA 70474 || ||| || || |||||||| |||||| | ||||| ||| | || || | ||||| Sbjct 3137389 CCGGGCGACTTTGTGCACACCATGGGCGACACACACGTCTATCTGAACCATGTAGAGCCC 3137448 Query 70475 TTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGG 70520 | |||| ||| || ||||| || |||| ||||||||| ||| Sbjct 3137449 CTTAAGGAGCAGCTGGAACGTACACCACGACCCTTTCCCAAGATGG 3137494 >seq2267 Length=1036559 Score = 89.7 bits (98), Expect = 8e-13 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 134236 ATACGCTCACAAATCAGTTGTGCGATGCGATCACC---CTTTGACACTACAAAGTCGTCA 134292 || ||||||||||| | || || ||||| ||||| |||| ||| | || ||| || Sbjct 446029 ATGCGCTCACAAATGAACTGGGCAATGCGGTCACCCCGCTTT---ACTTCGAAATCGACA 445973 Query 134293 TCGGAATGGTTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCG 134352 || ||||| ||||| | || || |||| ||| || || || |||||| || ||| Sbjct 445972 TCCGAATGATTAAACAAAACGACGCCAAGGTTACCGCGGTAATCCTCGTCCACCACGCCG 445913 Query 134353 GCTCCGACGTCGATTCCGTACTTGGCTGCCAGTTTGGATCGCGGAGCAATCCTACCGTAG 134412 || || || ||||| || ||| | |||||| |||||| || |||| | |||||| Sbjct 445912 GCGCCCACATCGATAAAGTTCTTCACGGCCAGTCCGGATCGTGGGGCAACGCGTCCGTAG 445853 Query 134413 CAACCTTCCGG 134423 |||| ||||| Sbjct 445852 GAACCCTCCGG 445842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741013384014960