Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq1821 109 2e-19 seq1744 98.7 4e-16 >seq1821 Length=3805 Score = 109 bits (120), Expect = 2e-19 Identities = 421/649 (65%), Gaps = 17/649 (3%) Strand=Plus/Minus Query 52570 TGGAGCGTGAAAATCGTGAACTGCGCCGCAGTAACGATATCCTTCGCCAGGCTTCCGCTT 52629 |||||||||| ||||||||||| | || || ||||| |||| || |||| Sbjct 3523 TGGAGCGTGAGGTCCGTGAACTGCGTCAGGCCAATGAGATCCTGAAGAAGGCCTCGGCTT 3464 Query 52630 ATTTTGCGAAGGCGGAGTTCGACCGCCTCTGGAAAAAATGATGCCACTGCTGGATAAGCT 52689 ||||||| |||||||| ||||||||| | ||||||| | | | || | || Sbjct 3463 ATTTTGCACAGGCGGAGCTCGACCGCCCGTTTCGCAAATGATCGCGTTTATTGA-AGTCT 3405 Query 52690 GC-GTGAGCAGTACGGGGTCGGACCGCTATGCAGCGAACTGCATATTGCCCCGTCAACGT 52748 || ||| | |||||||||| || | || ||| |||| |||||||||||||||| Sbjct 3404 GCCGTGCCGATTACGGGGTCGAGCCAATCTGTCGCGCTCTGCCGATTGCCCCGTCAACGT 3345 Query 52749 ATTACCA-CTGTCAGCAACAGCGACATCATCCGGATAAACGCAGTGCCCGTGCGCAGCGC 52807 ||| || | | | || | ||| | | ||||| | ||| | ||||| | |||| Sbjct 3344 TTTATCATCAGGCGGCCATAGCAAGAG-ATCCGACCACGGCCAGCCCGCGTGCCCGGCGC 3286 Query 52808 GATGACTGGCTGAAGAAAGAGATACAGCGCGTATACGATGAAAATCACAAGGTATACGGT 52867 ||| |||| | || | || | || | | | || || | || || ||| Sbjct 3285 GATAGGGAACTGATGGAACATATCCGCCGGATCTGGCAGGACAACCGTGCTGTTTATGGT 3226 Query 52868 GTGCGTAAAGTCTGGCGTCAGT-TGTTACGGGAAGGTAT-CAGAGTGGCCAGATGCACTG 52925 | ||| || || |||| ||| || || || || ||| || || | ||||||| Sbjct 3225 GCGCGCAAGGTGTGGCA-CAGCCTGCAGCGTGAGGGACGACAG-GTTGCACGCTGCACTG 3168 Query 52926 TGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTA 52985 | | || || ||| ||||| || ||||| ||||||| |||||| | Sbjct 3167 TTGAGCGCCTGATGCACAAGATGGGTCTGAAGGGTGTAATCCGGGGCCGGAAGGTCATCA 3108 Query 52986 CGACCATCAGCCGGAAA------GCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCG 53039 ||||| | ||||| | ||| || | | | ||| | || ||||| |||||| Sbjct 3107 CGACC--CGTCCGGATACGGCGCGCCCCTGTCCC-GATGACAGGGTCAACCGGCAGTTCC 3051 Query 53040 TGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGCAGG 53099 ||| || | || ||||||| ||||| | || ||||| || ||| || ||| | | Sbjct 3050 GGGCCGAGAGCCCCAACCAGCTCTGGGTCTCGGACTTTACCTATGTCCAGACCTGGAATG 2991 Query 53100 GCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATTGTGGGGTGGCGGG 53159 || | |||||||| |||||| ||||||||||||| ||| | || ||||| ||| | Sbjct 2990 GCATGGTCTATGTAGCGTTCGTCATTGATGTGTTCGCCCGCAGGATCGTGGGCTGGAAAG 2931 Query 53160 TCTCATCGTCCATGGAGACGACATTCGTGCTGGATGCACTGGAGCAGGC 53208 |||| | |||||| || |||||||| || || || || ||||| Sbjct 2930 TCTCGACTTCCATGACCACCCAGTTCGTGCTCGACGCCCTTGAACAGGC 2882 Score = 100 bits (110), Expect = 1e-16 Identities = 420/648 (65%), Gaps = 15/648 (2%) Strand=Plus/Minus Query 49730 TGGAACGTGAAAATCGTGAACTGCGCCGCAGTAACGATATCCTTCGCCAGGCTTCCGCTT 49789 |||| ||||| ||||||||||| | || || ||||| |||| || |||| Sbjct 3523 TGGAGCGTGAGGTCCGTGAACTGCGTCAGGCCAATGAGATCCTGAAGAAGGCCTCGGCTT 3464 Query 49790 ATTTTGCGAAGGCGGAGTTCGACCGCCTCTGGAAAAAATGATGCCACTGCTGGATAAGCT 49849 ||||||| |||||||| ||||||||| | ||||||| | | | || | || Sbjct 3463 ATTTTGCACAGGCGGAGCTCGACCGCCCGTTTCGCAAATGATCGCGTTTATTGA-AGTCT 3405 Query 49850 GC-GTGAGCAGTACGGGGTCGGACCGGTATGCAGCGAACTGCATATTGCCCCGTCAACGT 49908 || ||| | |||||||||| || | || ||| |||| |||||||||||||||| Sbjct 3404 GCCGTGCCGATTACGGGGTCGAGCCAATCTGTCGCGCTCTGCCGATTGCCCCGTCAACGT 3345 Query 49909 ATTACCATT-GTCAGCAACAGCGACATCATCCGGATAAACGCAGTGCCCGTGCGCAGCAC 49967 ||| ||| | | || | ||| | | ||||| | ||| | ||||| | || | Sbjct 3344 TTTATCATCAGGCGGCCATAGCAAGAG-ATCCGACCACGGCCAGCCCGCGTGCCCGGCGC 3286 Query 49968 GATGACTGGCTGAAGAAAGAGATACAGCGCGTATACGATGAAAATCACCAGGTATACGGT 50027 ||| |||| | || | || | || | | | || || | || || ||| Sbjct 3285 GATAGGGAACTGATGGAACATATCCGCCGGATCTGGCAGGACAACCGTGCTGTTTATGGT 3226 Query 50028 GTGCGTAAAGTCTGGCGTCAGT-TGTTACGGGAAGGTAT-CAGAGTGGCCAGATGCACTG 50085 | ||| || || |||| ||| || || || || ||| || || | ||||||| Sbjct 3225 GCGCGCAAGGTGTGGCA-CAGCCTGCAGCGTGAGGGACGACAG-GTTGCACGCTGCACTG 3168 Query 50086 TGGCACGTCTCATGGCAGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGCA 50145 | | || || ||| ||||| || ||||| ||||||| |||||| || Sbjct 3167 TTGAGCGCCTGATGCACAAGATGGGTCTGAAGGGTGTAATCCGGGGCCGGAAGGTCATCA 3108 Query 50146 CTACC-GTCAGC---CGGAAAGCCGTTGCCGC-ATGCGACCGCGTAAACCGTCAGTTCGT 50200 | ||| ||| | ||| ||| || | | ||| || | || ||||| |||||| Sbjct 3107 CGACCCGTCCGGATACGGCGCGCCCCTGTCCCGATG--ACAGGGTCAACCGGCAGTTCCG 3050 Query 50201 GGCAGAACGTCCAGACCAGTTGTGGGTGGCTGATTTTACCTGGGTAAGCACATGGCAGGG 50260 ||| || | || ||||| | ||||| | || ||||||| || || ||| | || Sbjct 3049 GGCCGAGAGCCCCAACCAGCTCTGGGTCTCGGACTTTACCTATGTCCAGACCTGGAATGG 2990 Query 50261 CTTCGTTTATGTGGCGTTCATCATTGATGTGTTCGCCGGATACATCGTGGGATGGCAGGT 50320 | | || ||||| |||||| ||||||||||||||||| | |||||||| ||| | || Sbjct 2989 CATGGTCTATGTAGCGTTCGTCATTGATGTGTTCGCCCGCAGGATCGTGGGCTGGAAAGT 2930 Query 50321 CTCATCATCCATGGAAACAACATTCGTGCTGGATGCACTGGAGCAGGC 50368 ||| | |||||| || |||||||| || || || || ||||| Sbjct 2929 CTCGACTTCCATGACCACCCAGTTCGTGCTCGACGCCCTTGAACAGGC 2882 >seq1744 Length=1091 Score = 98.7 bits (108), Expect = 4e-16 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 29570 CCAGGGCTGGAAGCTGGGCGGGGCCATAAAAACCACCGAGCGCAAACTGGCTGAGGGAGT 29629 ||||||||||| ||| ||| || || || || |||| || ||||| ||||| || Sbjct 979 CCAGGGCTGGACGCTCTCCGGAGCTATCAAGACAGCCGAACGGAAACTCGCTGACGGCAG 920 Query 29630 ACTGGTGCATGGTGGTCAGCCACTGATGGCCTGGTGCGTTGGCAATGCCCGGGTGGAGCC 29689 ||| | ||| |||| ||||| | ||||| ||| ||| |||| ||| ||| ||| | Sbjct 919 CCTGCTCCATTGTGGGCAGCCCATCATGGCGTGGGCCGTCAGCAACGCCAAGGTAGAGGC 860 Query 29690 TAAAGGTAACGCCATTCTTATTACCAAACAGGCCAGCGGACGGGGGAAAATTGACCCGCT 29749 || |||||||| | |||||||| ||||| ||| ||||||||||||||| Sbjct 859 GCGTGGCAACGCCATCATCATTACCAAGCAGGCTGCCGGTTATCTGAAAATTGACCCGCT 800 Query 29750 GATGGCGCTCTTCAATGCGGTA 29771 ||| | || |||| |||||| Sbjct 799 CATGTCACTGCTCAACGCGGTA 778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185243519314384