Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4563 176 1e-38 seq4042 122 2e-22 seq4475 114 3e-20 seq4681 105 2e-17 seq4471 95.1 3e-14 >seq4563 Length=5383265 Score = 176 bits (194), Expect = 1e-38 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || ||||||||||||||||||||||| || || | || ||||| || || Sbjct 4507165 TGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 4507224 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 4507225 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 4507284 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||| |||||| ||||| || || || ||||| || || Sbjct 4507285 GCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 4507344 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGTGT 104566 || || || || || |||||||| |||||| Sbjct 4507345 AGGGTCTTAACGAAGATCTGCATGTTGTGT 4507374 >seq4042 Length=640736 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || ||||| || ||||||||||| ||||| || | || | ||||| Sbjct 502940 AGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAGGTACGTCCGTCC 502999 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || |||||||| || || | | ||| ||||| || || ||||| || || || Sbjct 503000 TCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCT 503059 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | ||| ||| ||| || ||||| | || || ||| Sbjct 503060 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTC 503119 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| |||||||| Sbjct 503120 TTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 503151 >seq4475 Length=5362458 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || ||||| | || ||||| || || || || Sbjct 1656732 GTGGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCGAGCTGCTTGCCG 1656791 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| || || || || || || ||||| || || Sbjct 1656792 GCGAAGATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTC 1656851 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || ||| || ||||| || || || ||||| ||||| | || Sbjct 1656852 ACATTCTCAATGGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTTCCAGTCAAGGTC 1656911 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 1656912 TTCACAAAGATCTGCATTTTG 1656932 >seq4681 Length=7884553 Score = 105 bits (116), Expect = 2e-17 Identities = 221/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 238578 ACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCAT 238637 ||| |||| ||| ||||| || || || | ||| |||| | ||||| ||||| Sbjct 5741604 ACTTACGACGACCTGTGGAACTCGGCGCAACTGCAACTGGTGCGCGAGGGCAAGATGCAC 5741663 Query 238638 AGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAA 238697 | || | || ||||| ||||| ||||| || || || |||||| |||| | || Sbjct 5741664 GGCTTTCTGCGCATGTACTGGGCAAAAAAAATTCTCGAGTGGACTGCCACTCCTGAAGAG 5741723 Query 238698 GCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACG-GATCCTAA 238756 || || ||| || | || |||||||| ||| ||||| || ||| || ||||| Sbjct 5741724 GCGCTGGAGTATGCGATATTACTAAACGATAAGTACAGCCTCGATGG-ACGTGACCCTAA 5741782 Query 238757 CGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAG 238816 ||| || || || ||||||||||| || | || | ||||| | || ||| ||| | Sbjct 5741783 CGGTTATGTTGGGTGTATGTGGTCTATTGGCGGTGTGCACGACATGGGTTGGAAGGAGCG 5741842 Query 238817 ACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGT 238876 ||||| || ||||| || | |||||||| ||| | || | | ||| |||||||| Sbjct 5741843 CCCTATTTTCGGAAAGGTCCGGTACATGAACTATCAGGGGTGTCGGCGAAAGTTTGATGT 5741902 Query 238877 AAATGCTTTTATCAGTAAATACAGAGG 238903 ||| || || ||| |||| |||| Sbjct 5741903 AAACGCCTTCGTCATGCGATACGGAGG 5741929 >seq4471 Length=3711889 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || |||||||| ||||| || || |||||| || || ||| |||| || ||| | Sbjct 603905 GCCTTTGCCGCCGTAGAGGGCATCTTCTTTAGCGGCAGCTTCGCCTCTATTTTCTGGCTA 603964 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 |||||| | ||||| ||||| || | || ||||| |||||| | ||| | |||||||| Sbjct 603965 AAGAAACGTGGCCTGATGCCGGGCCTGACATTCTCCAACGAACTTATATCCCGGGACGAA 604024 Query 269261 GGTTTACACTGCGACTTCGC 269280 || || ||||||||||| || Sbjct 604025 GGCTTGCACTGCGACTTTGC 604044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151325435163768