Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq2267 163 2e-35 >seq2267 Length=1036559 Score = 163 bits (180), Expect = 2e-35 Identities = 213/290 (73%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||||||||| || ||||| ||| |||| | ||| || || ||||| ||||| | Sbjct 446107 ACGCCCGTGGAACCAAATCCTCCTTCGCCGCGTTCGGTGTCCTCCAGTTTGTCCACCAGT 446048 Query 5561 TCCACATCGGGGAACGCAG-CGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| || ||| | || |||||| || || | ||| || || ||||| ||| ||| Sbjct 446047 TCCAGTTC-TGGATAGAAGATGCGCTCACAAATGAACTGGGCAATGCGGTCACCCCGCTT 445989 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 ||| ||||||||| | ||||| || |||| || ||||| | ||| |||||||| Sbjct 445988 TACTTCGAAATCGACAT--CCGAATGATTAAACAAAACGACGCCAAGGTTACCGCGGTAA 445931 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || |||| | |||||| |||||||| ||||| |||| ||| || ||||| ||||| || Sbjct 445930 TCCTCGTCCACCACGCCGGCGCCCACATCGATAAAGTTCTTCACGGCCAGTCCGGATCGT 445871 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || || ||||| |||||| | || || |||| || | ||||||||| || Sbjct 445870 GGGGCAACGCGTCCGTAGGAACCCTCCGGAACTTGCACCTGCAGGTCTGT 445821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430028476589552