Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq4563 140 2e-28 >seq4563 Length=5383265 Score = 140 bits (154), Expect = 2e-28 Identities = 198/273 (73%), Gaps = 9/273 (3%) Strand=Plus/Minus Query 25387 TGGGAAAGGGTC-TGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGG 25445 |||||||||||| ||| | | | || ||||| ||| || || ||||| || | ||| Sbjct 3137488 TGGGAAAGGGTCGTGGTGTACGT-TCCAGCTGCTCCTTAAGGGGCTCTACATGGTTCAGA 3137430 Query 25446 TAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAA 25505 |||||||| | ||| |||| ||||| ||||| || ||||| | || || || || | Sbjct 3137429 TAGACGTGTGTGTCGCCCATGGTGTGCACAAAGTCGCCCGGCTTCAGACCCGTCACATGG 3137370 Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| || ||||| |||| ||||||||| ||||| || || || |||||| Sbjct 3137369 GCGATCATGTAGGTAAGGAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAAGCCCATG 3137310 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC--TTCGTCGCT----CACGTAAAA 25619 || | | ||| ||||||||||| ||||| ||||| |||| || ||||| || Sbjct 3137309 TCGGCGC-TCCTTTGGTAGAGCTGGCACGAAAGCTCATTTCGGGTCTGTGAGACGTAGAA 3137251 Query 25620 CTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 ||| || | || |||||| |||||||| || Sbjct 3137250 CTGCGCCAGGCAGTGGCACGGCGGAAGAGCCAT 3137218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340117096718058