Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4563 102 7e-17 seq4042 98.7 8e-16 seq4475 91.5 1e-13 >seq4563 Length=5383265 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| || ||||| || |||||| || |||||||| || | Sbjct 1837954 ACCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 1838013 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || | |||||||||||||| ||| || | || | |||||||||||| | Sbjct 1838014 CAGAGTG-CGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 1838072 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||| ||||| ||| | | | | ||||| || | || |||| Sbjct 1838073 GAATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCA 1838132 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || |||||||| |||||||| || || ||||| ||| Sbjct 1838133 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGGTG 1838185 >seq4042 Length=640736 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||| ||||| || | ||| || |||||||||||||||| || || | Sbjct 502960 CTCCTTCTGAATATTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAA 503019 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || |||||||||||||| || | | |||||||| || || ||||| Sbjct 503020 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 503079 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| |||| || ||| ||| | || ||||| || |||||||| || ||||| Sbjct 503080 CTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCAC 503139 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 503140 AAAGATCTGCAT 503151 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||||| | | ||| ||||| | || |||||| || || ||||| || | | Sbjct 503153 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGAC 503212 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || |||||||||||||||| || || | || |||||||||||||| || Sbjct 503213 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503272 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || || ||| | | | ||||| |||| || ||| | Sbjct 503273 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCGGAAGGCTCAACC 503332 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| || || |||||||| |||||||| Sbjct 503333 TCCAAAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCAT 503379 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || || ||||| || | ||| || |||||||||||||||| || || | Sbjct 503417 TCCTTCTGGATATTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAG 503476 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || |||||||||||||| || | | ||||||||| || || ||||| | Sbjct 503477 ATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 503536 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| |||| || ||| ||| | || ||||| || |||||||| || |||||| Sbjct 503537 TCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACA 503596 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 503597 AAGATCTGCAT 503607 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||||| | | ||| ||||| | || |||||| || || ||||| || | | Sbjct 503609 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGAC 503668 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || |||||||||||||||| || || | || |||||||||||||| || Sbjct 503669 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503728 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || || ||||| | | ||||| |||| || ||| Sbjct 503729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACT 503788 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || || | ||| ||||| ||||| ||||| Sbjct 503789 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 503835 >seq4475 Length=5362458 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| ||||| | | || || ||||| ||| |||||| || ||||||||||| | Sbjct 1656701 ACCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 1656760 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | || || |||||||| ||| || | || | |||||||||||| | Sbjct 1656761 AAGAGTGCGGC-CATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAG 1656819 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||||| || || ||| | | | | ||||| || | || |||| Sbjct 1656820 GGATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCA 1656879 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || | || |||||||| |||||||| Sbjct 1656880 CCTCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 1656928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421225807240946