Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4672 122 5e-23 seq4483 122 5e-23 seq4811 120 2e-22 seq4560 120 2e-22 seq3207 120 2e-22 >seq4672 Length=1134593 Score = 122 bits (134), Expect = 5e-23 Identities = 88/101 (87%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| | | || ||||||||| || | |||||||||| |||||||||| ||||||||| Sbjct 1125064 AAAAAAAAAAATAATAAAAAG-CAGACTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 1125122 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 1125123 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1125163 Score = 116 bits (128), Expect = 2e-21 Identities = 89/106 (84%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAA----TCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||| |||| || | |||||| |||| |||||||||| |||||||||| ||||| Sbjct 1131902 AAAAATAGCTTTGAGAAAAAAATTATCAAGCTGGCCCATGAGGGGATCGAACCCGCGACC 1131843 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 1131842 TTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 1131797 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1125941 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1125882 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1125881 TGAGCTAATGGGCC 1125868 >seq4483 Length=2900833 Score = 122 bits (134), Expect = 5e-23 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 2339885 AATAAAAAATTATGATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 2339944 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 2339945 GACGCTCTAACCAACTGAGCTAATGGGCC 2339973 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||||| | | |||||||||| |||||||||| |||||||||||||||||||| Sbjct 2340135 AATAAAAAAGTATTAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 2340194 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 2340195 CGACGCTCTAACCAACTGAGCTAATGGGCC 2340224 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2339403 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2339462 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2339463 TGAGCTAATGGGCC 2339476 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2339649 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2339708 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2339709 TGAGCTAATGGGCC 2339722 >seq4811 Length=1929942 Score = 120 bits (132), Expect = 2e-22 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 819931 AAAAAATTATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 819872 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| |||||||||||||||||||||| Sbjct 819871 GCTCTAACCAACTGAGCTAATGGGCCGT 819844 >seq4560 Length=481110 Score = 120 bits (132), Expect = 2e-22 Identities = 88/101 (87%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||| || ||||| ||| | |||||||||||| |||||||||| ||||||||| Sbjct 471326 AATATATAA--AATAACAAAAGAGGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 471383 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 471384 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 471424 >seq3207 Length=544705 Score = 120 bits (132), Expect = 2e-22 Identities = 82/92 (89%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| || | |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 384257 AAAAAACCATGTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 384198 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||| |||||||||||||||||||||| || Sbjct 384197 CGCTCTAACCAACTGAGCTAATGGGCCGTTGA 384166 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261475437473896