Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4563 123 2e-23 seq4042 123 2e-23 seq4475 116 3e-21 >seq4563 Length=5383265 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||||||| || || || || | ||||| || | ||| | | Sbjct 4507153 CGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAGAGGGTGCGGCCA 4507212 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || | ||||| | | ||||||||||||||||| ||||||||| Sbjct 4507213 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 4507272 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || || ||||| ||| ||| || | | ||||| |||| |||||| Sbjct 4507273 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATG 4507332 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || || || |||||||||||| Sbjct 4507333 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATG 4507368 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| || ||| || |||| |||||| Sbjct 1837972 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 1838031 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||||||||| ||||| || || ||||| | Sbjct 1838032 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTG 1838091 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| ||||| || ||| ||||| | | || || || | |||||||| || Sbjct 1838092 GATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 1838151 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || |||||||| ||||| |||||| Sbjct 1838152 GCCGGTGAGGGTTTTCACGAAGATTTGCATG 1838182 >seq4042 Length=640736 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || | |||||| ||||||||||| ||||| || | || || ||| | Sbjct 503153 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGAC 503212 Query 94841 ATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || | ||||||||||| ||||| | ||||| || | ||||||||||| | Sbjct 503213 AAGGTACGTCCG--TCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGG 503270 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || || || ||||| | || || ||||| ||| ||| ||||| | | || | Sbjct 503271 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCGGAAGGCTCAA 503330 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | |||||||| || || ||||| || ||||||||||||||||||| Sbjct 503331 CCTCCAAAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATGC 503381 Score = 122 bits (134), Expect = 8e-23 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856 ||||| ||||||||||||||||| || | || || ||| || || || | |||| Sbjct 503399 ACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAGTCGGACAAGGTACGTCCG--TCCT 503456 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| ||||| | ||||| || | ||||||||||| || || || || ||||| | Sbjct 503457 CCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCT 503516 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||||||| ||| ||||| | | || || || | |||||||| | Sbjct 503517 GGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTCT 503576 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || ||||||||||||||||||| Sbjct 503577 TGCCGGTGAGGGTCTTCACAAAGATCTGCATGC 503609 Score = 120 bits (132), Expect = 3e-22 Identities = 159/219 (73%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850 |||| ||||| ||||||||||| ||||| || | || || ||| || || || | Sbjct 502937 CGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAGGTACGTCCG 502996 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||||||| ||||| | ||||| || | ||||||||||| || || || || | Sbjct 502997 --TCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCT 503054 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || ||||||||| ||| ||||| | | || || || | |||| Sbjct 503055 TGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGA 503114 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || || || || || ||||||||||||||||||| Sbjct 503115 TGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATGC 503153 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || | |||||| ||||||||||| ||||| || | || || ||| | Sbjct 503609 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGAC 503668 Query 94841 ATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || | ||||||||||| ||||| | ||||| || | ||||||||||| | Sbjct 503669 AAGGTACGTCCG--TCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGG 503726 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || || || ||||| | || || ||||||||| ||| ||||| | | || | Sbjct 503727 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAA 503786 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||| || ||||| | ||| ||||| || || ||||| Sbjct 503787 CTTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 503835 >seq4475 Length=5362458 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | ||| || | |||||||| | ||| || ||||| || | ||| |||||| Sbjct 1656702 CCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 1656761 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || ||||| || ||| | ||||| | | |||||||||||||| Sbjct 1656762 AGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 1656821 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | || || ||||| || | | ||||| | | || || Sbjct 1656822 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACC 1656881 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| |||||||| | || ||||||||||||||||| Sbjct 1656882 TCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 1656928 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| | | || | ||||||||| | || || ||||| || | ||| || ||| Sbjct 1656473 TCCTCCGCGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1656532 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| ||| || ||||| |||||| | ||||| | | ||||| |||||||| Sbjct 1656533 CAGTGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGG 1656592 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||||| || ||||| | || || ||||| || | | ||||| | | || || Sbjct 1656593 GATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCAC 1656652 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || ||||| ||||||||||| Sbjct 1656653 TTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448263484396560