Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4072 158 2e-34 seq4253 93.3 7e-15 >seq4072 Length=402393 Score = 158 bits (174), Expect = 2e-34 Identities = 182/244 (75%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || |||||||| ||||| || || || ||||||||||| Sbjct 3533 CGCCAAGCGTCATCGCAAAGTGCTGCGAGATAATATCCAGGGTATAACGAAGCCAGCTAT 3592 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| ||||||||||||| || || ||||| | ||||| | | || || || | Sbjct 3593 CCGTCGTTTGGCTCGTCGTGGCGGGGTGAAGCGCATTTCTGGTCTCATTTACGAGGAAAC 3652 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||| | ||| |||||||| ||||| || || ||||| Sbjct 3653 ACGTGGCGTTCTGAAGGTGTTCTTGGAGAACGTTATCCGAGATGCCGTCACTTACACCGA 3712 Query 16612 GCACGCTAA-ACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||| || | | || |||||||| |||||||| | || || || |||| | |||| Sbjct 3713 ACACGCCAAGAGGAAAAACTGTCACAGCCATGGATGTTGTGTACGCCCTGAAGAGGCAAG 3772 Query 16671 GCCG 16674 |||| Sbjct 3773 GCCG 3776 >seq4253 Length=168970 Score = 93.3 bits (102), Expect = 7e-15 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | || || ||||||||||| || ||||||||||| ||||| Sbjct 105185 CGCCAAGCGTCATCGTAAGGTGCTCCGTGATAACATCCAGGGTATCACCAAGCCCGCTAT 105126 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| |||||||| || || |||||| |||| || ||| | || || || | Sbjct 105125 TCGCCGCTTGGCCCGTCGTGGAGGTGTGAAGCGTATCTCAGGCTTGATTTACGAGGAAAC 105066 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 105065 TCGCGGTGT 105057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070677837578