Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4563 372 4e-98 seq4471 237 2e-57 >seq4563 Length=5383265 Score = 372 bits (412), Expect = 4e-98 Identities = 1208/1867 (65%), Gaps = 18/1867 (1%) Strand=Plus/Minus Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044 |||||||| ||||| ||||||| | | || || || || || ||||| |||||||| Sbjct 4594972 CTTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCC 4594913 Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104 ||||| || || |||| |||||| || || ||| ||||| ||| | || Sbjct 4594912 GGTTTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTGG 4594853 Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164 ||||||| ||| ||||| | || ||||| ||||| || || || || | || || || Sbjct 4594852 CTCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGC 4594793 Query 62165 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62223 |||||| || | | ||| | |||||||||| ||||| |||| || | | | Sbjct 4594792 CATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAACCTT 4594733 Query 62224 CTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCA-TAATCCTATTCTTG 62279 || ||||| || | |||| ||||| || || || ||| | | || ||||| Sbjct 4594732 CTG-TGGAATAGTCTCAATATTTTGAATTGAACC-CCTGCTGGAAATGATTTGGTTCTTC 4594675 Query 62280 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62339 || ||||| | ||| || | ||| || || | || | | ||| | ||||| || Sbjct 4594674 ATGTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCACC 4594615 Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399 || ||||| ||||||| ||||| | || ||||||||| | |||||||| || | || Sbjct 4594614 TGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGAT 4594555 Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62459 || || || |||| ||| |||||||| ||||| || |||||||| || |||| | Sbjct 4594554 TCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAG 4594495 Query 62460 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62519 || | | ||||| | | || || ||||| || ||| | ||| || | || | Sbjct 4594494 TTCCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCGTC 4594435 Query 62520 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 62579 || || || | ||| || || || | ||| |||| Sbjct 4594434 GGAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAA 4594375 Query 62580 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62639 || |||||||| ||||| ||| ||||| ||||||||| || || || || || || ||| Sbjct 4594374 GTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAA 4594315 Query 62640 ATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGGATAATT 62698 || |||||||| |||| || ||| | || | ||||| || ||| |||| | Sbjct 4594314 ATCGTTTCGAATATCTGCTGATTCAAGAGGCTC-GCTTCATCACTTTCATATGGGAATCG 4594256 Query 62699 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62758 | |||||| || || || || || || ||||| || || || | || | ||| ||| Sbjct 4594255 CATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAA 4594196 Query 62759 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62818 ||| || | || ||||| | |||||| | || ||||| || || || |||||||| Sbjct 4594195 ATTGGACTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATT 4594136 Query 62819 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TAT 62875 |||| || ||| || ||||| ||||| ||||| || | || | | Sbjct 4594135 TCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTATGTCTTTTCCGGTGT 4594076 Query 62876 TACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 62935 ||||||||||| | |||| ||||||| |||||||| || | ||||| | | Sbjct 4594075 GACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGA 4594016 Query 62936 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 || | | || || ||||| | ||||| || || || || || | ||| || || || Sbjct 4594015 GTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTT 4593956 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 |||||| |||| || |||||||| | || || | ||| | |||||||| | || | Sbjct 4593955 ACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGC 4593896 Query 63056 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-TTATAGATTTGTATCTCCTTTCTC 63114 ||| ||||| || ||| | | | ||||||| | | | | || | | || ||| Sbjct 4593895 TTCAATAATGGCGAACCATAAGGATTGAGCCTTAACTGTTCGGTTGGCACGGCC---CTC 4593839 Query 63115 TT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172 || || ||| ||| || ||| || || || ||||| |||| || | ||||| Sbjct 4593838 TTGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGG 4593779 Query 63173 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63232 |||| | ||| ||||| | ||||| ||||| | ||| || |||||||| || || Sbjct 4593778 GCATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAG 4593719 Query 63233 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63292 |||||| ||||| | || ||| ||||||| || | || || || || || || || Sbjct 4593718 ATCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTT 4593659 Query 63293 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63352 || || || || || || | | | |||||| ||||| || |||| ||| || || | Sbjct 4593658 TTTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAA 4593599 Query 63353 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63412 |||| || || ||| ||||||||||| | || | || |||||| | || || Sbjct 4593598 GGCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGACCCT 4593539 Query 63413 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGC 63472 || ||| |||| | || || || | ||||| || ||| | || | | || | || Sbjct 4593538 CAGCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTCCGCATATCGAAGTACCCTTTGC 4593479 Query 63473 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63532 || ||| | || ||| || || || || || |||||| || | || ||| | Sbjct 4593478 TCGGATACAATGAACATTTAGTCCAATGCCACCAGCAGATTTAGAAATCATGGCACATTG 4593419 Query 63533 TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 | | | | | | || || || ||| || | ||||| | | || ||||| Sbjct 4593418 CTCCACAGACTTAAAAATGCCTTCGATGGAGTCGGCTGTCATGGTTAAAAGGAAACATGA 4593359 Query 63593 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 ||| | || | ||| | || | || ||| | || || || || || || || | Sbjct 4593358 AGATAGCTGCGGCCGATTTGTGGCTGCTGCAAAAAGCGTTGGTGATGCATGAGTGAAGTA 4593299 Query 63653 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63712 || || | ||||| ||||| || | || | ||| ||||| || ||||| Sbjct 4593298 CCGCTCTGACAAAAGATTATACGTTTCTACGGCCGCGTCGATATCTTCCCCGTGGATTCC 4593239 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 | || || ||||| ||||| || || || | |||| ||||||| |||| | || || Sbjct 4593238 GATCGCAACGCGCATCAACATATGTTGCGGCCGTTCAGCGATCTTACCGTTTCTCTTTAA 4593179 Query 63773 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 ||| || || ||| | |||||||| || ||||| || || |||||| || ||||| Sbjct 4593178 CAAATAAGAACGTTCGAGGGTTTTAAACCCGAAATAATTATACCCAAAGTCGCGATCGTA 4593119 Query 63833 AATAATA 63839 || ||| Sbjct 4593118 GATTATA 4593112 >seq4471 Length=3711889 Score = 237 bits (262), Expect = 2e-57 Identities = 557/836 (67%), Gaps = 5/836 (1%) Strand=Plus/Minus Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063 |||||||| ||||| || ||||| || ||||| || || || ||||| |||| Sbjct 604347 ACTCCCATACGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGC 604288 Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123 || || | |||||||||| || || || | || || || ||| || || | Sbjct 604287 GAGATCATCTCCATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGC 604228 Query 33124 TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33183 || | ||| | || ||||| || || || || ||||| || |||||||| Sbjct 604227 TCCACCAGCAAACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATG 604168 Query 33184 CCTAT-AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATC 33242 || || ||||||| | ||||| || | ||||| || || || ||||||| ||||| || Sbjct 604167 CCGATCAAGTTTA-CGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTC 604109 Query 33243 TGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAA 33302 ||||| | | | ||| | ||| | |||| | || | |||||||| Sbjct 604108 GCGGATAATCTCGATGATGCGCTCTCGCTTTGGTCGCTGCACGAGGTGCTGGAACATCAA 604049 Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 || || |||||||||| || ||||| | || ||||||||||| || || || Sbjct 604048 GACGGCAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTCAG 603989 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| |||||||| || || ||||| || || || ||||| || |||||| Sbjct 603988 GCCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAGAA 603929 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG- 33479 ||| || ||||| || |||||||| |||| || ||||||| || ||| || ||| Sbjct 603928 GATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGGATGA 603869 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | ||||| || ||||| |||||| |||||||| || |||||||| Sbjct 603868 GATCCAGGAAAGCGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGCATT 603809 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 || || || | | || |||| | || || ||||||| | ||||||||| Sbjct 603808 GAACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATACAT 603749 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||| || || | |||||| || || ||||| || |||||||| || | ||||| || || Sbjct 603748 TTCGGAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGTGAT 603689 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 ||| || || | |||||| || ||| || || ||||| ||||| || || || Sbjct 603688 CTGAACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGCGGC 603629 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 33779 ||| || |||| || ||| || || | ||||| |||| || ||| || Sbjct 603628 AAAGAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCAGTC 603569 Query 33780 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | | ||| || || | ||| ||||| ||||| ||||| || || ||||| |||| Sbjct 603568 CGTCAGATCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAGCCTCAGCCT 603513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622908686289360