Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4563 159 3e-34 seq4042 140 3e-28 seq4475 116 3e-21 >seq4563 Length=5383265 Score = 159 bits (176), Expect = 3e-34 Identities = 911/1439 (63%), Gaps = 48/1439 (3%) Strand=Plus/Minus Query 144737 GCCGCTGGCTTGGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAG 144796 || |||||||| || |||| ||| ||||| || |||||||| || | ||| | ||| Sbjct 4594944 GCAGCTGGCTTTGTCCGCAGATAATACATTCCGGTTTTGAGCCCAGCTTTCCAGGAGTAA 4594885 Query 144797 TCGTGTATCGACGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGG 144856 |||||| ||||||| | || | ||||| || ||| | ||| | || || Sbjct 4594884 AAGTGTATGGACGTCAGTTTTCCATAGTTTGGCTCTGCTACATGTATATTAAAGGACTGA 4594825 Query 144857 CTTTGATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCATTTCA-- 144914 || ||||| || || || || || |||||||| | ||| | || | |||| Sbjct 4594824 CTCTGATCTATAAACGCACCACGATCAGCGGCCATTTTAAT------TGTGGACTTCACA 4594771 Query 144915 ----TTTCCCAAGCGGTCTTGTACAAACGTTT--AATGTGGTCCGGAATGCCGTCAATCG 144968 |||||||| |||| ||||| || || || | | ||||| ||||| Sbjct 4594770 GAGATTTCCCAAACGGTTTTGTA--AAGGTCACGAACCTTCTGTGGAATAGTCTCAATAT 4594713 Query 144969 CCTGAATCGACCCCTTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGT-ACAGTTTT 145027 ||||| || ||| || | || || |||| ||| || ||| ||| | Sbjct 4594712 TTTGAATTGAACCCCTGCTGGAAATGATTTGGTTCTTCATGTCAT-CGTCCCACAAGTCC 4594654 Query 145028 AACTTGATCAAGTCG-TCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACAC 145086 | || ||||||| |||| || | || || || ||||| || ||||| | || || Sbjct 4594653 AGCTCAGTCAAGTCCCTCAACAAATGA-TGGTTAACCACCTGGAATTCGCCAGACAGAAC 4594595 Query 145087 ACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTG 145146 | | ||| | |||| || | || || ||||| ||||| ||||||| || || Sbjct 4594594 TCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGATTCGTTGTTGCCCATAATCTG 4594535 Query 145147 AGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTT 145206 ||| || | ||| || ||||| || |||| | || || || | ||||||||||| Sbjct 4594534 AGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAGTTCCGGACACCGTGCTTCTT 4594475 Query 145207 GATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTC 145266 || ||||||||| | ||| ||||| || ||||| |||||||||||| Sbjct 4594474 TATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCGTCGGAACTTTGTCCCACATGTC 4594415 Query 145267 GTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT 145326 |||||||||||| || | ||| | ||||| || | | | | ||| ||| | Sbjct 4594414 GTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAAGTTTCGTATGGGCCTTCGAT 4594355 Query 145327 TTTGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCT 145386 | || | || ||||| || |||| ||| || | ||||| || ||| || ||| Sbjct 4594354 CTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAAATCGTTTCGAATATCTGCTG 4594295 Query 145387 GTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGC 145446 || | || |||||||||| || || || || | |||| || | || ||||| || Sbjct 4594294 ATTCAAGAGGCTCGCTTCATCACTTTCATATGGGAATCGCATGAGAATTAATGCATCAGC 4594235 Query 145447 GAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTC 145506 | ||||| | ||| | ||| | ||| ||||| ||| ||| | |||| ||| || Sbjct 4594234 AAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAAATTGGACTTCCTTGCCT-CTG 4594176 Query 145507 G-ATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAA 145565 | | ||||| || ||||| || || || | |||| || ||| || | Sbjct 4594175 GCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATTTCTGGTAACCGTCTTGGTGA 4594116 Query 145566 TGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGG 145625 | | | |||| || || | | || || ||| | | || | | Sbjct 4594115 CTTCCTTTAGTTTTTTGAAATCGTAT---GTCTTTTCCGGTGTGACAAACATGTTAAGAG 4594059 Query 145626 CGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGG 145685 | || || ||||| ||||||||||| |||| || | | | ||| | || || || | Sbjct 4594058 CAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGAGTACTCGACAATTTCTG 4593999 Query 145686 CGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACG 145745 |||||| || || ||||| ||||| || | ||| ||||| ||||| ||||||||||| | Sbjct 4593998 TGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTTACTCTTCCTGTTGCAGG 4593939 Query 145746 CGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAA-----A 145800 | |||||| ||||||| ||||| ||||| ||||| || | || || |||| | Sbjct 4593938 CATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTG-CTTCA--ATAATGGCGA 4593882 Query 145801 ACGGTGCAAGTCCTGCGCACGCACCTG--CTGCTGGTAGCGGCCCTCTTCTTCGTATTTC 145858 || | ||| || || | | ||| | | ||| | |||||||||| || |||||| Sbjct 4593881 ACCAT--AAGGATTGAGC-CTTAACTGTTCGGTTGGCA-CGGCCCTCTTGCTCATATTTC 4593826 Query 145859 CTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGA 145918 || | || ||||| | || | |||| ||||| || || |||| || Sbjct 4593825 ACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGGCATTTGTGCGGG 4593766 Query 145919 CACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCAC 145978 ||||| || ||||| | || ||||| | || || | ||| || | ||| || | |||| Sbjct 4593765 CACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGATCAGGTATCCAC 4593706 Query 145979 AGCGCGTACATCAAG---TCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAA 146035 | ||||| | ||| ||| |||| | | || || || ||||| ||| | Sbjct 4593705 AAGGCGTA-AAAAAGATCTCGGGCGCGATTC--TCTTCCTTGCCAGTGTTTTTCTTGAGT 4593649 Query 146036 TTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTT 146095 | || | | ||| || | |||||| || || | || | || | ||||||| Sbjct 4593648 TCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAAGGCTCCTGGA 4593589 Query 146096 CGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 || || ||| ||||| ||||| | ||| | | ||| || ||||| | || |||||| Sbjct 4593588 CGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGACCCTCAGCATGGG 4593530 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | |||||||||||| || |||||||| ||| | Sbjct 1837955 CCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1838014 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||| || || || Sbjct 1838015 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1838074 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||| ||| | | ||| | || || | | ||| | Sbjct 1838075 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 1838134 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| || ||||| ||||| || |||||| Sbjct 1838135 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATG 1838182 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| || || | || ||||| || ||||| || || || Sbjct 4507141 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAG 4507200 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| | ||||||||| || ||||| Sbjct 4507201 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 4507260 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| | | || |||| | || | |||||| | | |||| Sbjct 4507261 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 4507319 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || ||||| ||||||||| Sbjct 4507320 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATG 4507368 >seq4042 Length=640736 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | |||||| || ||||| | || |||||||| ||||| ||||| ||| Sbjct 502924 GCCACCGCGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGA 502983 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || |||||| |||||||| || ||| |||| ||||||||||| || || || Sbjct 502984 CAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 503043 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| ||| || ||||| | ||| | || |||| | ||| | Sbjct 503044 GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAAC 503103 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | ||| || ||||| || || || || || ||||||||| || Sbjct 503104 CTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATGCCT 503155 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||| ||||| ||||| | || |||||||| || || ||||| ||| Sbjct 503608 GCCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGA 503667 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || |||||| |||||||| || ||| |||| ||||||||||| || || || Sbjct 503668 CAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 503727 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| ||| || ||||| | ||| | || |||| | ||| | Sbjct 503728 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAAC 503787 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||| || |||||||| ||||| Sbjct 503788 TTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 503835 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||| ||||| ||||| | || |||||||| || || ||||| ||| Sbjct 503152 GCCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGA 503211 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || |||||| |||||||| || ||| |||| ||||||||||| || || || Sbjct 503212 CAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 503271 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| ||| || ||| | | ||| | || |||| | ||| | Sbjct 503272 GATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCGGAAGGCTCAAC 503331 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || ||||| || || || || || ||||||||| Sbjct 503332 CTCCAAAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATG 503380 Score = 125 bits (138), Expect = 7e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| || || ||||| | || || ||||| || || ||||| ||| Sbjct 503380 GCCACCACGCAGACGGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAGTCGGA 503439 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || |||||| |||||||| || ||| |||| ||||||||||| || || || Sbjct 503440 CAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 503499 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| ||| || ||||| | ||| | || |||| | ||| | Sbjct 503500 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAAC 503559 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | ||| || ||||| || || || || || ||||||||| || Sbjct 503560 CTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATGCCT 503611 >seq4475 Length=5362458 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| ||||| || || | ||| |||||||| || |||||||| ||| | Sbjct 1656474 CCTCCGCGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1656533 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 1656534 AGTGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 1656593 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || |||| | ||| | Sbjct 1656594 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACT 1656653 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| |||||||| Sbjct 1656654 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||||||| || || || || | || |||||||| || |||||||||||| Sbjct 1656702 CCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 1656761 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||||||||| ||| |||| | ||||||||| || |||||| Sbjct 1656762 AGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 1656821 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || | | ||| | Sbjct 1656822 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACC 1656881 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | || || || || |||||||| Sbjct 1656882 TCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 1656928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471983617808640