Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq4475 91.5 1e-13 seq4563 86.0 5e-12 >seq4475 Length=5362458 Score = 91.5 bits (100), Expect = 1e-13 Identities = 187/271 (69%), Gaps = 18/271 (7%) Strand=Plus/Plus Query 16672 TTTATTTTAAAATGTATTATTGTTTAGCC-GCATTTACCCTCCTCGTAGCCTCAGTACCA 16730 ||||||| |||||| ||| || |||| | ||| ||||| || || | || |||| Sbjct 1656441 TTTATTTGGAAATGT-TTAGA-TTAAGCCTGGATT---CCTCCGCGGAGACGGAGCACCA 1656495 Query 16731 TATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC----TCC 16786 || || ||||||||||| || ||||||||||||| || || |||||| || Sbjct 1656496 AGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGT----GCGTCCATCTTCG 1656551 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GG 16844 | || || || || | || || ||||| ||||| ||| | ||||| ||||| || Sbjct 1656552 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGG 1656611 Query 16845 CAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 || || |||||| | | | |||||| |||||| ||||| |||||||| | Sbjct 1656612 ATCTTGGC--CTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCT 1656669 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || || || |||||||| Sbjct 1656670 TGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||| |||| | || | | || Sbjct 1656717 AGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCT 1656776 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || | || || ||||| || || ||| | ||||| ||||| Sbjct 1656777 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCT 1656836 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| |||||| |||| ||||||| Sbjct 1656837 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCCGAAGGCTCCACCTCCAGAGTGATGG 1656894 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | ||||| |||| || || ||||| |||||||||||| Sbjct 1656895 TCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 1656932 >seq4563 Length=5383265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || || | ||| Sbjct 1837970 AGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 1838029 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| || | || || ||||| || || || | |||||| ||||| Sbjct 1838030 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCT 1838089 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| |||||| | | | ||||| |||||| |||| ||||||||| Sbjct 1838090 TGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTC 1838149 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || ||||| || || || ||||| Sbjct 1838150 TTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1838181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405063581548540