Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1135 136 3e-27 seq4227 123 2e-23 seq4563 104 2e-17 seq4608 98.7 7e-16 seq4042 96.9 2e-15 seq4564 95.1 8e-15 seq4475 89.7 3e-13 seq989 84.2 1e-11 seq632 82.4 5e-11 >seq1135 Length=1025 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 619 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 560 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 559 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 525 >seq4227 Length=46070 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | ||||| || || | |||| | ||| || || || || || ||||| Sbjct 17654 ATGGCCACCGTAAACGTTAACCGCAGTGTGACTGACATCTTTTATCGTTATAAGATGCCA 17595 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 || ||||| || |||||||| || ||||||||||| ||||| ||||| |||| || | Sbjct 17594 CG--TCTGCAGGCAAAGGTCGAAGGCAAGGGAAACGGCATTAAGACCGTTCTTGTTAATA 17537 Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 || ||||||| ||| ||| ||||||| || || || || || || |||||||| || | Sbjct 17536 TGGCTGAAGTTGCTCGGGCCATCGGACGTCCGGCTACTTATCCAACTAAATATTTTGGCT 17477 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||| | || || || || | ||| ||||| || Sbjct 17476 GCGAGTTGGGGGCCCAAACTCTGTTCGATCATAA 17443 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || |||||||| | || || ||||||||| | |||| |||| || || | || Sbjct 17368 AATGAGCGCTTTGTTGTAAATGGATCGCATGATGTCAACAAGTTGCAAGATTTGTTAGAT 17309 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 |||||||||||||||||||| | || | |||||||| || ||||||||| | | | | Sbjct 17308 GGCTTTATTCGCAAGTTTGTTTTATGCCCTGAATGCGACAATCCGGAGACCAATTTGACT 17249 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || ||| | || | | ||||| || ||| ||||| || || || | ||| || | Sbjct 17248 GTATCTGCAAAAAATCAGACCATTTCGCAGTCATGCAAGGCTTGTGGCTTCCACGGTTTG 17189 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 ||| | | || ||| | ||||||||||| |||| || |||||| Sbjct 17188 CTGAAAGTCAACCATAAAGTGAACACCTTCATTGTGAAAAACCCTCCA 17141 >seq4563 Length=5383265 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||||| ||||| || |||||| || || ||||| || | Sbjct 1837953 TACCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 1838012 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | ||| | || || | || || ||||| || || || || || ||||| | || Sbjct 1838013 ACAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 1838072 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || ||||| ||||| ||||||||||| || || || | || | Sbjct 1838073 GAATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCA 1838132 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || || || || || || || | |||||||||||| || |||||| Sbjct 1838133 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATG 1838182 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||||| |||||| || | |||| ||| || |||||||| || ||||| Sbjct 4507140 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGA 4507199 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || || | || || || || || || || || || ||||| | || Sbjct 4507200 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 4507259 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||||||| ||| || || ||||| | || |||||| | ||| || Sbjct 4507260 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 4507319 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||||| | ||| || ||||| ||||||||||| Sbjct 4507320 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATGTT 4507370 >seq4608 Length=12950 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 12710 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 12769 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 12770 GGTTATATTTAG 12781 >seq4042 Length=640736 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||||| |||||||| | ||| |||||| ||||||||||| || ||| Sbjct 502925 CCACCGCGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 502984 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || |||| |||| || | || ||||| || || || | || || ||||| | |||| Sbjct 502985 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503044 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || ||||| || || ||| || |||| || || || | ||||| Sbjct 503045 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACC 503104 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || || | ||| ||||| || ||||||||| Sbjct 503105 TCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATG 503152 >seq4564 Length=1015545 Score = 95.1 bits (104), Expect = 8e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 4727 CTCTCTATTCAGAGTTCTTTTCAACTTTCTCTCACGGTACTTGTTTACTATCGGTCTCAT 4668 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 4667 GGTTATATTTAG 4656 >seq4475 Length=5362458 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | |||||| | ||||| ||||||||| |||||| || || |||||||| | Sbjct 1656700 TACCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGG 1656759 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || ||||| || || || || || ||||| | | Sbjct 1656760 AAAGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAG 1656819 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || ||||| || || ||||||||||| | || || | || | Sbjct 1656820 GGATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCA 1656879 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || || |||||||| ||||| || |||||||| || Sbjct 1656880 CCTCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1656931 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | |||||| ||||| ||| |||||| || || ||||| || |||| ||| | Sbjct 1656485 ACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCC 1656544 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | || |||||||| || || || || || || || | |||| || || || Sbjct 1656545 ATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATACCCTCCTT 1656604 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || ||||||||||| | || || || ||||| | || || Sbjct 1656605 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGAT 1656664 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || |||| ||| |||||||| |||||||| Sbjct 1656665 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 >seq989 Length=1204 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGG-TACTTGTTCGCTATCGGTCTCG 20005 |||||| |||| ||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1137 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTTACTTGTTTACTATCGGTCTCA 1196 Query 20006 CGGTAATA 20013 ||| ||| Sbjct 1197 TGGTTATA 1204 >seq632 Length=4389 Score = 82.4 bits (90), Expect = 5e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 19961 TTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAG 20018 ||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| Sbjct 3578 TTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCATGGTTATATTTAG 3635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334927009592126