Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4563 399 3e-106 seq4471 212 8e-50 >seq4563 Length=5383265 Score = 399 bits (442), Expect = 3e-106 Identities = 1213/1866 (65%), Gaps = 16/1866 (1%) Strand=Plus/Minus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 |||||||| ||||| ||||||| | | || || || || || ||||| |||||||| Sbjct 4594972 CTTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCC 4594913 Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959 ||||| || || |||| |||||| || || ||| ||||| ||| | || Sbjct 4594912 GGTTTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTGG 4594853 Query 61960 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62019 ||||||| ||| ||||| | || ||||| ||||| || || || || | || || || Sbjct 4594852 CTCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGC 4594793 Query 62020 CATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62078 |||||| || | | ||| | |||||||||| ||||| |||| || | | | Sbjct 4594792 CATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAACCTT 4594733 Query 62079 CTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCA-TAATCCTATTCTTG 62134 || ||||| || | |||| ||||| || || || ||| | | || ||||| Sbjct 4594732 CTG-TGGAATAGTCTCAATATTTTGAATTGAACC-CCTGCTGGAAATGATTTGGTTCTTC 4594675 Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 || ||||| | ||| || | ||| || || | || | | ||| | ||||| || Sbjct 4594674 ATGTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCACC 4594615 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 || ||||| ||||||| ||||| | || ||||||||| | |||||||| || | ||| Sbjct 4594614 TGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGAT 4594555 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62314 || || || |||| ||| |||||||| ||||| || |||||||| || |||| | Sbjct 4594554 TCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAG 4594495 Query 62315 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62374 || | | ||||| | | || || ||||| || ||| | ||| || | || | Sbjct 4594494 TTCCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCGTC 4594435 Query 62375 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 62434 || || || | ||| || || || | ||| |||| Sbjct 4594434 GGAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAA 4594375 Query 62435 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62494 || |||||||| ||||| ||| ||||| ||||||||| || || || || || || ||| Sbjct 4594374 GTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAA 4594315 Query 62495 ATGGTTTCGAAGATCTTCTTATTTA-GATCTTGCGCTTCCAGGCTATCAAATGGATAATT 62553 || |||||||| |||| || ||| | || | |||||| || ||| |||| | Sbjct 4594314 ATCGTTTCGAATATCTGCTGATTCAAGAGGCT-CGCTTCATCACTTTCATATGGGAATCG 4594256 Query 62554 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62613 | |||||| || || || || || || ||||| || || || | || | ||| ||| Sbjct 4594255 CATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAA 4594196 Query 62614 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 ||| || | || ||||| | |||||| | || ||||| || || || |||||||| Sbjct 4594195 ATTGGACTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATT 4594136 Query 62674 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TAT 62730 |||| || ||| || ||||| ||||| ||||| || | || | | Sbjct 4594135 TCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTATGTCTTTTCCGGTGT 4594076 Query 62731 TACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 62790 ||||||||||| | |||| ||||||| |||||||| || | ||||| | | Sbjct 4594075 GACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGA 4594016 Query 62791 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850 || | | || || ||||| | ||||| || || ||||| || | ||| || || || Sbjct 4594015 GTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTT 4593956 Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 |||||| |||| || |||||||| | || || | ||| | |||||||| | || | Sbjct 4593955 ACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGC 4593896 Query 62911 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCT 62970 ||| ||||| || ||| | | | ||||||| | | | ||| | | |||| Sbjct 4593895 TTCAATAATGGCGAACCATAAGGATTGAGCCTTAACTGTTCGGTTG--GCACGGCCCTCT 4593838 Query 62971 T--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGA 63028 | || ||| ||| || ||| || || || ||||| |||| || || ||||| Sbjct 4593837 TGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGG 4593778 Query 63029 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63088 |||| | ||| ||||| | ||||| ||||| | ||| || |||||||| || ||| Sbjct 4593777 CATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGA 4593718 Query 63089 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63148 ||||| ||||| | || ||| ||||||| || | || || || || || || || Sbjct 4593717 TCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTTT 4593658 Query 63149 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63208 || || || || || || | | | |||||| ||||| || |||| ||| || || | Sbjct 4593657 TTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAAG 4593598 Query 63209 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268 |||| || || ||| ||||||||||| | || | || |||||| | || ||| Sbjct 4593597 GCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGACCCTC 4593538 Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328 | ||| |||| | |||||||| || ||||| || || | || | | || | || Sbjct 4593537 AGCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTCCGCATATCGAAGTACCCTTTGCT 4593478 Query 63329 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63388 || ||| | || ||| || || || || || |||||| || | || ||| | Sbjct 4593477 CGGATACAATGAACATTTAGTCCAATGCCACCAGCAGATTTAGAAATCATGGCACATTGC 4593418 Query 63389 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 | | | | | | ||||| || || || | ||||| | | || ||||| | Sbjct 4593417 TCCACAGACTTAAAAATGCCTTCGATGGAGTCGGCTGTCATGGTTAAAAGGAAACATGAA 4593358 Query 63449 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCAT 63508 || | || | ||| | || | || ||| | || || || || ||||| || | Sbjct 4593357 GATAGCTGCGGCCGATTTGTGGCTGCTGCAAAAAGCGTTGGTGATGCATGAGTGAAGTAC 4593298 Query 63509 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCT 63568 || || | ||||| ||||| || | || | ||| ||||| || ||||| Sbjct 4593297 CGCTCTGACAAAAGATTATACGTTTCTACGGCCGCGTCGATATCTTCCCCGTGGATTCCG 4593238 Query 63569 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63628 | || || ||||| ||||| || || || | |||| ||||||| |||| | || ||| Sbjct 4593237 ATCGCAACGCGCATCAACATATGTTGCGGCCGTTCAGCGATCTTACCGTTTCTCTTTAAC 4593178 Query 63629 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63688 || || || ||| | |||||||| || ||||| || || |||||| || ||||| Sbjct 4593177 AAATAAGAACGTTCGAGGGTTTTAAACCCGAAATAATTATACCCAAAGTCGCGATCGTAG 4593118 Query 63689 ATAATA 63694 || ||| Sbjct 4593117 ATTATA 4593112 >seq4471 Length=3711889 Score = 212 bits (234), Expect = 8e-50 Identities = 554/838 (66%), Gaps = 9/838 (1%) Strand=Plus/Minus Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420 |||||||| ||||| || ||||| || ||||| || || || || || || | Sbjct 604347 ACTCCCATACGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGC 604288 Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480 || || | |||||||||| ||| || || | || || || ||| || || | Sbjct 604287 GAGATCATCTCCATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGC 604228 Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 32540 || | ||| | ||||||||||| || || || ||||| || |||||||| Sbjct 604227 TCCACCAGCAAACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATG 604168 Query 32541 CCTAT-AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 32599 || || ||||||| | ||||| || | ||||| || || || ||||| | |||||||| Sbjct 604167 CCGATCAAGTTTA-CGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTC 604109 Query 32600 TGTTATAATA--GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATC 32657 ||||| ||| | | | || | ||| | | || | || | |||||| Sbjct 604108 GCGGATAATCTCGATGATGCGCTCTCGCT--TTGGTCGCTGCACGAGGTGCTGGAACATC 604051 Query 32658 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 || || || |||||||| | || ||||| | || | ||||||||| || || Sbjct 604050 AAGACGGCAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTC 603991 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 32777 || || ||||| |||||||| || || ||||| || || || || || || |||| Sbjct 603990 AGGCCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAG 603931 Query 32778 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCAT 32835 || || || ||||| || |||||||| |||| || ||||||| || ||| || || Sbjct 603930 AAGATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGGAT 603871 Query 32836 GT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 32894 | ||||| | ||||| || ||||| |||||| ||||| ||||| || ||| Sbjct 603870 GAGATCCAGGAAAGCGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGCA 603811 Query 32895 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATAC 32954 || || || || | | || |||| | ||||| || |||| | ||||||| Sbjct 603810 TTGAACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATAC 603751 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTA 33014 ||||| || || | |||||| || || || || || ||||||||||| | ||||| || Sbjct 603750 ATTTCGGAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGTG 603691 Query 33015 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 33074 ||||| || || | |||||| || | | || || ||||| ||||| || || Sbjct 603690 ATCTGAACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGCG 603631 Query 33075 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33134 ||||| || |||| || ||| || || | ||||| |||| || ||| Sbjct 603630 GCAAAGAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCAG 603571 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 || | | ||| || || | ||||||||| ||||| ||||| || || ||||| |||| Sbjct 603570 TCCGTCAGATCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAGCCTCAGCCT 603513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633592825701600