Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4681 197 1e-45 seq4563 91.5 1e-13 seq4042 89.7 4e-13 >seq4681 Length=7884553 Score = 197 bits (218), Expect = 1e-45 Identities = 220/294 (75%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047 |||||| ||| ||| ||| |||||||| |||| || | || ||||| ||| || Sbjct 5741897 AAACTTTCGCCGACACCCCTGATAGTTCATGTACCGGACCTTTCCGAAAATAGGGCGCTC 5741838 Query 51048 TTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGG 51107 || | | ||||||||||||||| ||| ||||||||||| || |||||| |||||| Sbjct 5741837 CTTCCAACCCATGTCGTGCACACCGCCAATAGACCACATACACCCAACATAACCGTTAGG 5741778 Query 51108 ATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTC 51167 || || ||||| | |||||| | ||||||||| ||||| ||||| ||| ||| || Sbjct 5741777 GTCACGTCCATCGAGGCTGTACTTATCGTTTAGTAATATCGCATACTCCAGCGCCTCTTC 5741718 Query 51168 TGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCAT 51227 | | | | ||||| || | |||||| || |||||||||||||||| | |||||||| Sbjct 5741717 AGGAGTGGCAGTCCACTCGAGAATTTTTTTTGCCCAGTACATGCGCAGAAAGCCGTGCAT 5741658 Query 51228 CTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGT 51281 ||||||||||| || ||| ||| ||||||||||||| ||||||| ||| Sbjct 5741657 CTTGCCCTCGCGCACCAGTTGCAGTTGCGCCGAGTTCCACAGGTCGTCGTAAGT 5741604 >seq4563 Length=5383265 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || | || Sbjct 4507367 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCG 4507308 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 4507307 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 4507252 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | ||||||| ||||| | || || Sbjct 4507251 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 4507192 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| ||||| | || || ||||| Sbjct 4507191 TAATATTCAGAAAGAGTCCACTTTGCACTTGGTGCT 4507156 >seq4042 Length=640736 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || ||||||| | ||||| ||| | || Sbjct 503835 ATGCAAATTTTCGTGAAGACTTTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCTTCC 503776 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || || || Sbjct 503775 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 503716 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || || | || || || ||| |||||| Sbjct 503715 CAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAAT 503656 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || | ||||| ||||| Sbjct 503655 ATCCAGAAGGAGTCTACTTTGCATTTGGTGCT 503624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433301879258990