Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4563 205 8e-48 seq4475 138 1e-27 seq4042 100 2e-16 >seq4563 Length=5383265 Score = 205 bits (226), Expect = 8e-48 Identities = 995/1561 (64%), Gaps = 34/1561 (2%) Strand=Plus/Minus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 |||||||||||| || | ||| || | ||| || ||||| || |||| ||| ||||| || Sbjct 4594972 CTTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCC 4594913 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGG 128897 ||||| | || |||||| | || | ||| || | |||| | | ||| | || Sbjct 4594912 GGTTTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTGG 4594853 Query 128898 TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC 128957 | | | |||||||| || ||||| ||||| ||||| | || ||||| || || Sbjct 4594852 CTCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGC 4594793 Query 128958 CATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017 ||| ||| ||||| |||||||| || ||||||||||| || | || | Sbjct 4594792 CATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAACCTT 4594733 Query 129018 TTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 | ||| || ||||| || || | || || | | ||| |||| ||| ||| Sbjct 4594732 CTGTGGAATAGTCTCAATATTTTGAATTGAACCCCTGCTGGAAATGATTTGGTTCTTCAT 4594673 Query 129078 CTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTG 129137 | |||| |||| | ||| | |||| || ||| | | ||| | || || Sbjct 4594672 GTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCACCTG 4594613 Query 129138 AAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 || || || | || ||| | | ||||| || | || ||||||| || ||||| Sbjct 4594612 GAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGATTC 4594553 Query 129198 ATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTT 129257 |||||||| | || ||||| || | || || ||||| ||| || || ||||| Sbjct 4594552 GTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAGTT 4594493 Query 129258 TCGCAAACCGTGCTGTTTAAT-GTCtttttttAATTGTGTCCAGTCCCACATCGATGTGG 129316 || | |||||||| || || | || ||| || || ||||||||| | || | Sbjct 4594492 CCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTG-CCAGTCCCAGAGGTTCGTCG 4594434 Query 129317 GTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGG 129376 | | | ||||| |||||| ||||| || || || | || || || | Sbjct 4594433 GAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAAG 4594374 Query 129377 AATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAA 129436 |||| ||| | | || ||||| ||||| |||||||| || ||| | |||| Sbjct 4594373 TTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAAA 4594314 Query 129437 TTGTTTCGGCAATTT-TGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACG 129494 | |||||| ||| | || || ||||| | | || | || ||||| || || | || Sbjct 4594313 TCGTTTCG--AATATCTGCTGATTCAAGAGGCTCGCTTCATCACTTTCATATGGGAATCG 4594256 Query 129495 CAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCT 129554 || | |||| || || || || |||| || | || | ||| ||||| | Sbjct 4594255 CATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAA 4594196 Query 129555 ATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATT 129614 |||||| || |||| || ||||| ||||||| || || || ||||| | ||| Sbjct 4594195 ATTGGACTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATT 4594136 Query 129615 CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGAT 129674 || || | || || || | |||| ||| |||| ||| | || || | Sbjct 4594135 TCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTAT--GTCTTTTCCGGT 4594078 Query 129675 GTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTC 129734 || |||||| || | | ||| || ||||| || || || ||| | || | | Sbjct 4594077 GT-GACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGA 4594019 Query 129735 ACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTG 129794 ||||||||||||||| | |||||| ||||| |||||||||||| | || || || Sbjct 4594018 GGAGTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTG 4593959 Query 129795 ATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTG 129854 ||||| ||| ||||||| ||||| ||| | | ||| ||||| | || ||||| ||||| Sbjct 4593958 GTTACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTG 4593899 Query 129855 CGTTTCGACAATGGTCCTGAAC---AAGTCTCGAGCCTTGATCTGT---CTTACAAATTT 129908 | ||| | ||||| |||| ||| | ||||||| | |||| || | Sbjct 4593898 TGCTTCAATAATGG---CGAACCATAAGGATTGAGCCTT-AACTGTTCGGTTGGCA--CG 4593845 Query 129909 GCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGA- 129967 ||| || ||| ||| |||||| | | ||||||||| ||| ||| || | Sbjct 4593844 GCCCTCTTGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAG 4593785 Query 129968 GCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCA 130027 || | ||| ||| |||| ||||| | ||| ||||| || || || ||||||| Sbjct 4593784 GCCAGGGC-ATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCA 4593726 Query 130028 TAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTC--GCGCTTTTCT-ATCCTCGG 130084 | || | ||| |||| ||||| |||||| || | ||||| |||| |||| |||| | Sbjct 4593725 TGAAAAGATCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTG- 4593667 Query 130085 CACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACAT 130144 || |||| || ||||| || || || | | || | |||||| || || | | Sbjct 4593666 --CCAGTGTTTTTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGT 4593609 Query 130145 AAATTGCCATTGCGCCCTTCCGTTTGCCCCCT---TGGTCAACGTGGCGCACGGCATTGT 130201 |||| || | || || || ||||| ||| || || || | ||| | | || | Sbjct 4593608 AAATAGCAAAGGCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTAT 4593549 Query 130202 TGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCA-ATGAAA 130260 || |||| | || ||| | ||| ||| |||| || || ||||| | | || || || Sbjct 4593548 TGAAGACCCTCAGCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTC-CGCATATCGAA 4593490 Query 130261 CTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATC 130320 | || || || | |||||| |||| || ||||| || || |||| || ||| Sbjct 4593489 GTACCCTTTGCTCGGATACAATGAACATTTAGTCCAATGCCACCAGCAGATTTAGAAATC 4593430 Query 130321 A 130321 | Sbjct 4593429 A 4593429 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | ||||| || || |||| | || ||||| | | Sbjct 1838181 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 1838122 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||| |||||||||||||| ||||| || ||||| Sbjct 1838121 GACACCATCGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 1838062 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | |||||| ||||| | ||||| |||||| Sbjct 1838061 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 1838002 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | || || || | || |||| || ||| Sbjct 1838001 ATCCAGAAGGAGTCGACCCTTCACTTGGTGCTCCGTCTGCGTGGTGGT 1837954 >seq4475 Length=5362458 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || || || || || || ||||||| || ||||| | Sbjct 1656931 AAAATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACTCTGGAGGTGGAGCCT 1656872 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || | || || || ||||||||||||||||| || || ||| Sbjct 1656871 TCGGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCAGAT 1656812 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | || ||| |||||| | ||||||||| Sbjct 1656811 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACTCTTTCCGATTAC 1656752 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||||| | || || ||| | || ||||| |||||| Sbjct 1656751 AACATCCAGAAGGAGTCCACTCTTCACTTGGTTCTCCGTTTGCGTGGAGGT 1656701 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || ||||||| |||||||| | || Sbjct 1656700 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTGGAGCCATCC 1656641 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || |||||||||||||| || || || || Sbjct 1656640 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAG 1656581 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | || ||| ||||| | ||||| |||||| Sbjct 1656580 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGCACACTGTCCGACTACAAC 1656521 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || || || | || | |||||||| Sbjct 1656520 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGCGGAGG 1656474 >seq4042 Length=640736 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || || ||||| || || || || |||| | ||||| || | Sbjct 503838 AATATGCAAATTTTCGTGAAGACTTTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCT 503779 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | || | |||| || || || ||||||||||| || || || ||| Sbjct 503778 TCCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAT 503719 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || || || || || ||| | ||||| || ||| | ||||| ||| Sbjct 503718 CAGCAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTAC 503659 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || || | ||||| || | || |||||||||| Sbjct 503658 AATATCCAGAAGGAGTCTACTTTGCATTTGGTGCTCCGTCTGCGCGGAGG 503609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || ||||| | || || || | || Sbjct 503151 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 503092 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || ||||| Sbjct 503091 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCAG 503032 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||| | ||||| || ||| | ||||| ||||| Sbjct 503031 CAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAAT 502972 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | ||||| || |||| | ||||| || Sbjct 502971 ATTCAGAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTACGCGGTGG 502925 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || ||||| | || || || | || Sbjct 503607 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 503548 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || || ||||| Sbjct 503547 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 503488 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||| | ||||| || ||| | ||||| ||||| Sbjct 503487 CAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAAT 503428 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| || | ||||| ||| | || |||| || || Sbjct 503427 ATCCAGAAGGAATCTACTTTGCATTTGGTTCTCCGTCTGCGTGGTGG 503381 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || ||||| | || || || | || Sbjct 503379 ATGCAGATCTTTGTGAAGACCCTTACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 503320 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| || || || ||||| Sbjct 503319 GACACCATCGAGAACGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 503260 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||| | ||||| || ||| | ||||| ||||| Sbjct 503259 CAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAAT 503200 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||||| || | || |||||||||| Sbjct 503199 ATCCAGAAGGAGTCTACTTTGCATTTGGTGCTCCGTCTGCGCGGAGG 503153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419702699058490