Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4471 289 5e-73 seq4563 170 4e-37 >seq4471 Length=3711889 Score = 289 bits (320), Expect = 5e-73 Identities = 510/732 (70%), Gaps = 21/732 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||||||||| ||||| || || || || || || |||||||||| | || | Sbjct 603617 CTGGCCTTCTTTGCCGCTTCCGATGGAATCGTGAACGAGAACCTGGTTGAGCGATTTAGC 603676 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||| ||| | |||||| |||||||||||||| |||||||| || || || ||| Sbjct 603677 CAGGAGGTTCAGATCACTGAGGCACGCTGCTTCTACGGTTTCCAGATCGCAATGGAAAAC 603736 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC-CGTCGAGCG 42601 |||||||| || |||| ||| || |||| ||||||| ||||| | || |||| Sbjct 603737 GTGCACTCCGAAATGTATAGTGTCCTGATCGACACATACATCCGAGATCCGCATC-AGCG 603795 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACTGG 42659 | |||||||| ||||| ||||||||||| ||| | ||| |||||||||||| Sbjct 603796 GGAGTACCTGTTCAATGCCATCGAGACGATGCCGGCTGTA--AAGCGCAAGGCGGACTGG 603853 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 ||||| ||||||| | | | | || | || || ||| | | | |||||| | Sbjct 603854 GCGCTTTCCTGGATCTC-ATCCAAGTCAGCCAATTTTGGAGAGCGAATTATCGCCTTTGC 603912 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 |||||| |||||||||||||| ||| ||||||||| || |||||||| ||| || Sbjct 603913 CGCCGTAGAGGGCATCTTCTTTAGCGGCAGCTTCGCCTCTATTTTCTGGCTAAAG--AAA 603970 Query 42779 GGTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 ||| | |||||| || || || ||||| |||||||| || | ||||||| || || Sbjct 603971 CGTGGCCTGATGCCGGGCCTGACATTCTCCAACGAACTTATATCCCGGGACGAAGGCTTG 604030 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG--- 42893 || | ||||||||| | | ||||| | |||||| || ||| | ||| Sbjct 604031 CACTGCGACTTTGCCGTCTTGATGTTCCAG---CACCTCGTGC---AGCGACCAAAGCGA 604084 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 ||||| || | || ||| || || |||| || ||| |||||||||| || | Sbjct 604085 GAGCGCATCATCGAGATTATCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTTACAGAT 604144 Query 42954 TCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 | || ||||| | || |||||||||| |||||| |||| | |||||||| ||| Sbjct 604145 GCCCTTCCCGTAAACTTGATCGGCATGAATTGCGACCTGATGTCCCAGTACATCGAGTTT 604204 Query 43014 GTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCC 43073 ||||| |||| | | ||| || | ||| | | |||||||||| | ||| Sbjct 604205 GTCGCAGACCGTTTGCTGGTGGAGCTTGGTGTTGGAAAGATCTACAACACCAAGAACCCT 604264 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 ||| | || ||||||| |||||| |||| || ||||| ||||| ||||||||| || Sbjct 604265 TTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTCGAGAAGAAGGTG 604324 Query 43134 GCCGACTACCAG 43145 | ||| |||||| Sbjct 604325 GGCGAGTACCAG 604336 >seq4563 Length=5383265 Score = 170 bits (188), Expect = 4e-37 Identities = 927/1452 (64%), Gaps = 64/1452 (4%) Strand=Plus/Minus Query 243735 CCACGCTGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTC 243793 ||||| ||||||| | || | || | || | ||| |||| ||| || ||||| ||||| Sbjct 4594967 CCACGGTGAACTGAATGGCATTCG-CAGCTGGCTTTGTCCGCAGATAATACATTCCGGTT 4594909 Query 243794 TTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTT 243853 ||||| ||| ||||| || | ||| |||| |||||| || | ||| || ||| Sbjct 4594908 TTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTT-TCCAT----AG-TTT 4594855 Query 243854 GGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGC 243913 || || | || ||| | | || | |||||| ||||| || | || | | || Sbjct 4594854 GGCTC-TGCT---ACATGTATA--TTAAAGGACTGACTCTGATCTATAAACGCACCACGA 4594801 Query 243914 TCTGCGGCCATGGTGATGAGGTCCTTCT--GAGATATCTCATACGCCGTCTTGTAGATGG 243971 || |||||||| | || | |||| ||||| || || ||| || ||||| | || Sbjct 4594800 TCAGCGGCCATTTTAATTGTGGACTTCACAGAGATTTCCCAAACG--GTTTTGTAAA-GG 4594744 Query 243972 GCTTGAGG-TGCTCGGGGAACCCT-TCGATGTTCTGCACCGAGCCCTTG-TGGACGATGA 244028 | || | || | |||| | || || || || | || ||| || |||| |||| Sbjct 4594743 TCACGAACCTTCT-GTGGAATAGTCTCAATATTTTGAATTGAACCCCTGCTGGAA-ATGA 4594686 Query 244029 GCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGC--TCCAGCGCCTCGACCAGGTG 244086 ||| | ||||| ||||| ||||| | ||| || | || || |||| || | || Sbjct 4594685 TTTGGTTCTTCATGTCATCGTCCCACAAGTCCA-GCTCAGTCAAGTCCCTCAACAAA-TG 4594628 Query 244087 CCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGT--TGCTGCTG 244144 ||| |||||||| || || || ||||| || | | ||||| | | | | | Sbjct 4594627 ATGGTTAACCACCTGGAATTCGCCAGACAGAACTCTTC--TGGTATAAATATTAGTAGTA 4594570 Query 244145 AGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGC 244204 |||||||| || ||||||||| ||||| || || || || ||||| || Sbjct 4594569 TACGGCTCGAAAGATTCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGA 4594510 Query 244205 GACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCC 244262 | |||||||| ||||| || |||||| ||| || || || | |||| | || Sbjct 4594509 GCAACCAGCAGGGAGTTCCGGACACCGTGCTTCTTTATC--GACTCCTTTAGCTTTTGCC 4594452 Query 244263 AGTCCCACATGCCCGAGAGGTCCTCGCG--TTTGAGGCCCCACATGTCAAACTGCAGCAG 244320 ||||||| ||| | || ||| |||| |||||||||| |||||| | Sbjct 4594451 AGTCCCA-------GAG-GTTCGTCGGAACTTTGT---CCCACATGTCGTACTGCAAAAT 4594403 Query 244321 CCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT 244380 || ||||| || ||||| ||||| || || ||| || || ||| ||| || | | Sbjct 4594402 TCCTTTGCTTACCGGGCTTCCCTCATAAGTTTCGTATGGGCCTTCGATCTGAGCTAATTC 4594343 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 ||| || | || | || | ||||| || || ||||| ||| || |||| | || Sbjct 4594342 ACAACTGGCTTCCAAAGCCCCATAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGGCT 4594283 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 || | | | | |||| | ||| | || || | || || | ||||| || Sbjct 4594282 CGCTTCATCACTTTCATATGGGAATCGCATGAGAATTAATGCATCAGCAAAGCCCTGAAC 4594223 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAA 244560 |||||||| | ||| | || | | ||||| | | || || |||| || ||||| Sbjct 4594222 TCCGATGCCCACGGGGCGATGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAAAA 4594163 Query 244561 GTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAG 244620 |||| ||||| | ||||||||| || | ||| | | | | ||| || | || Sbjct 4594162 GTTGATATCGATTATCTTGTTGAGATTTCTGGTAACCGTCTTGGTGACTTC---CTTTAG 4594106 Query 244621 CTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC 244680 | | | | ||||| | | || | ||| | |||||| ||| || || Sbjct 4594105 TTTT---TTGAAATCGTATGTCTTTTCCG-----GTG----TGACAAACATGTTAAGAGC 4594058 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 | | |||| ||| || || || | ||| |||| | || ||||| |||||| || || Sbjct 4594057 AATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGAGTACTCGACAATTTCTGT 4593998 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||| | ||||||||| || |||||||| | | ||| || || ||| ||||||||| Sbjct 4593997 GCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTTACTCTTCCTGTTGCAGGC 4593938 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 |||||| ||||||| | || || || || | || || | | | | | ||| Sbjct 4593937 ATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGCTTCAATAATGGCGAACCA 4593878 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 | | |||||| || || | | || ||||||| ||| || || | Sbjct 4593877 TAAGGATTGAGCCTTAACTGTTCGGTTGGCACGGCCCTCTTGCTCATATTTCACATATAA 4593818 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 || || || |||||| || |||| ||||| ||||| ||||||||| || Sbjct 4593817 CTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGGCATTTGTGCGGGCACATAAG 4593758 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 ||| || || | ||| || | | |||||| || || || ||||| | ||| | Sbjct 4593757 GGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGATCAGGTATCCACAAGGCGTA 4593698 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 || || || | || | | ||| ||| ||||||||| ||| | || |||| ||| || Sbjct 4593697 AAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAATTC 4593638 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 |||||| || |||||||||||||| ||| | ||| | ||| || || |||||| ||| Sbjct 4593637 AAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAAGGCTCCTGGACGCTTGCCGCC 4593578 Query 245161 TCCCTGGTCCAC 245172 |||||| ||||| Sbjct 4593577 TCCCTGATCCAC 4593566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944280816228960