Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4681 145 6e-30 seq3412 104 2e-17 seq1171 102 6e-17 seq4563 82.4 6e-11 >seq4681 Length=7884553 Score = 145 bits (160), Expect = 6e-30 Identities = 206/290 (71%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCA 37899 |||||||| |||| ||| | || || ||||||||||| |||||||| | | |||||| Sbjct 5741617 TGTGGAACTCGGCGCAACTGCAACTGGTGCGCGAGGGCAAGATGCACGGCTTTCTGCGCA 5741676 Query 37900 TGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACCGCGCTCAACTACG 37959 |||| ||| || |||||| | || ||| ||| | || | ||||| | || | Sbjct 5741677 TGTACTGGGCAAAAAAAATTCTCGAGTGGACTGCCACTCCTGAAGAGGCGCTGGAGTATG 5741736 Query 37960 CCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGGCT 38019 | || | || || |||||||||||| | || || ||||| || |||||||| || || | Sbjct 5741737 CGATATTACTAAACGATAAGTACAGCCTCGATGGACGTGACCCTAACGGTTATGTTGGGT 5741796 Query 38020 GTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGGCA 38079 || |||||||||| |||| | ||||| | | ||| ||| || |||| ||| | Sbjct 5741797 GTATGTGGTCTATTGGCGGTGTGCACGACATGGGTTGGAAGGAGCGCCCTATTTTCGGAA 5741856 Query 38080 AGATTCGGTACATGAACTACAACGGATGTGTTAGGAAGTTTAATGTTAAC 38129 || | |||||||||||||| | || ||| | |||||| |||| ||| Sbjct 5741857 AGGTCCGGTACATGAACTATCAGGGGTGTCGGCGAAAGTTTGATGTAAAC 5741906 >seq3412 Length=1072 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 162 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 103 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 102 ATAACTGATATAATGAGCCTTTTGCGGTTTC 72 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 162 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 103 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 102 ATAACTGATATAATGAGCCTTTTGCGGTTTC 72 >seq1171 Length=1177 Score = 102 bits (112), Expect = 6e-17 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 204 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 145 Query 115589 AAAACTGATATATTGAGCCATTCGTGGT 115616 | |||||||||| |||||| || | ||| Sbjct 144 ATAACTGATATAATGAGCCTTTTGCGGT 117 Score = 102 bits (112), Expect = 6e-17 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 204 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 145 Query 114392 AAAACTGATATATTGAGCCATTCGTGGT 114419 | |||||||||| |||||| || | ||| Sbjct 144 ATAACTGATATAATGAGCCTTTTGCGGT 117 >seq4563 Length=5383265 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/144 (74%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951 |||| || ||| || | ||| || ||||||| ||||| || ||||||||| |||||| Sbjct 1837947 CAAT-GATACCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTG 1838005 Query 33952 TAATCTGCCA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 || || | || | || || | || |||| ||||||||||| || ||||| |||||||| Sbjct 1838006 TAGTCGGACAGAGTG-CGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG 1838064 Query 34011 ATCCACCGGCACGCTCTCTTTGTC 34034 ||| || | || ||| ||||| Sbjct 1838065 ATCTGGGGGAATGCCCTCCTTGTC 1838088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397038465326692