Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4471 125 9e-24 seq4563 122 1e-22 seq4472 100 3e-16 >seq4471 Length=3711889 Score = 125 bits (138), Expect = 9e-24 Identities = 519/809 (64%), Gaps = 10/809 (1%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || ||| ||||||||||||||||||||| ||||||| ||| ||||||| Sbjct 604333 GTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCAT 604274 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 |||| || |||||||| | ||| | || || || |||| || || | ||| Sbjct 604273 GAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGCTCCACCAGCAAACG 604214 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 || | ||| |||| ||||||| |||||| || | ||||| ||||| | ||| Sbjct 604213 GTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAGTTTAC 604154 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997 || || || || | |||| ||| |||||| |||| || || || | || || Sbjct 604153 GGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATAATCTCGAT 604094 Query 125998 AATGGTGTCCACCCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCTT 126056 ||| || | |||| ||| | | || || ||| | |||||||| || Sbjct 604093 GATGCGCTCTCGCTTTGGTC-GCTGCACGAGGTGCTGGAACATCAAGACGGCAAAGTCGC 604035 Query 126057 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGAC 126116 ||| | || ||||| ||||| || ||||| || ||||| ||| || ||||| || | Sbjct 604034 AGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTCAGGCCCGGCATCAGGC 603975 Query 126117 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACAC 126176 | || ||||| | ||||||||| | || || |||||||| ||||| || Sbjct 603974 CACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAGAAGATGCCCTCTACGG 603915 Query 126177 ACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCG 126236 || || || | | ||||| |||| | ||||| | | ||| | || Sbjct 603914 CGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGGATGAGATCCAGGAAAGCG 603855 Query 126237 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 126296 |||| | |||||| || | | ||| | |||| ||| || | || || | || | Sbjct 603854 CCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGCATTGAACAGGTACTCC- 603796 Query 126297 TTTCTGAT--GGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGAC 126354 ||||| |||||| |||||| | || || || ||| ||||| ||| || Sbjct 603795 -CGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATACATTTCGGAGTGCAC 603737 Query 126355 CATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 126414 |||| | | ||| | ||||||| |||| || || | ||||| ||||| | Sbjct 603736 GTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGTGATCTGAACCTCCT- 603678 Query 126415 GGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 126473 ||| |||| | | | | ||||| || ||||||||||| | ||||| || |||| Sbjct 603677 GGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGCGGCAAAGAAGGCCA 603618 Query 126474 GGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGT-CGTCAAGATCC 126532 | | | ||||| | | || | || || ||| | ||||| |||| |||||| Sbjct 603617 GCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCAGTCCGTC-AGATCC 603559 Query 126533 TTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 || || ||||| || |||||| ||||||| Sbjct 603558 TTGGACAGATCCACTTCCTCCACAGTCCA 603530 >seq4563 Length=5383265 Score = 122 bits (134), Expect = 1e-22 Identities = 449/699 (64%), Gaps = 31/699 (4%) Strand=Plus/Minus Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 ||| ||||| || || || ||||| || | || ||||| |||| || || || || || Sbjct 4594585 ATAAATATTAGTAGTATACGGCTCGAAAGATTCGTTGTTGCCCATAATCTGAGCAGTAGA 4594526 Query 114001 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 114060 ||||| ||||| || || | || ||| ||| |||| ||| | | | | || || Sbjct 4594525 TGCTGTTGGCATAGGAGCAACCAGCAGGGAGTTCCGGACACCGTGCTTCTTTATCGACTC 4594466 Query 114061 CTTGAGG----GC--GTCCCAG----TCGTAGTTGAGCTTTGTCTCCCCCTGCCACATAT 114110 ||| || || ||||||| |||| | || ||||||| |||||| | Sbjct 4594465 CTTTAGCTTTTGCCAGTCCCAGAGGTTCGTCG--GAACTTTGTC--------CCACATGT 4594416 Query 114111 CAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAA 114170 | |||| | || |||| | | || ||||||| | || ||||||||||| || | Sbjct 4594415 CGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAAGTTTCGTATGGGCCTTCGA 4594356 Query 114171 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAG 114230 || || ||||| | || || || | || | | || || || || || || | Sbjct 4594355 TCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAAATCGTTTCGAATATCTGCT 4594296 Query 114231 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCG 114290 ||||| | || || || ||| | | || ||| | ||| ||| |||| | Sbjct 4594295 GATTCAAGAGGCTCGCTTCATCACTTTCATATGGGAATCGCATGAGAATTAATGCATCAG 4594236 Query 114291 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT 114350 | | || || || |||| ||| | |||||||| |||| ||| ||||| | || ||| Sbjct 4594235 CAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAAATTGGACTTCCTTGCC-TCT 4594177 Query 114351 C-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTG 114409 || |||||||| || ||||||| | | | || |||||| |||| || ||| ||| Sbjct 4594176 GGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATTTCTGGTAACCGTCTTGGTG 4594117 Query 114410 ATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGA 114466 | ||| | || |||| | |||| | |||| ||| ||||| || | | Sbjct 4594116 ACTTCCTTTAGTTTTTTGAAATCGTAT------GTCTTTTCCGGTGTGACAAACATGTTA 4594063 Query 114467 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 114526 || || || || |||| ||||| || | |||||||| | |||||| | |||| Sbjct 4594062 AGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGAGTACTCGACAATT 4594003 Query 114527 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586 || || ||||| || | ||||||||||| | |||| || || ||| |||| Sbjct 4594002 TCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTTACTCTTCCTGTTG 4593943 Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 114625 || ||||||||| | ||||| || || | || || ||| Sbjct 4593942 CAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCC 4593904 >seq4472 Length=2353741 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966 ||||||||| || | | ||| || || || ||||| | || || | ||||| ||||| Sbjct 1765780 ATCTTTGCCTCCTGTCAAACGAGTACCGAACTGACCGCGTGGCTCCAACAGATTAATATT 1765839 Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 172025 ||| | ||||| ||| | ||||| ||||| || || ||| | | | | || || | Sbjct 1765840 GTTAGCACCCACAAAGTTCTGGGCCAGATTGACGATGGTCATCTGTAACGAA-ACCTCTC 1765898 Query 172026 CGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCAT 172085 |||| |||||||||||| | || || || | | | | ||| |||||||||| ||| Sbjct 1765899 CGTGGTGGTAGGCCGACATCTCGGCCACTGAACCGGAAAGCTGGGCCACCTTCACCTCCC 1765958 Query 172086 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTC 172124 |||| ||| | | |||||||| | |||||||||||| Sbjct 1765959 GCTTGTCGTTTCTCTTGAAGCACGTAAACATGACCTTTC 1765997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597316668613680