Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4563 154 1e-32 seq4475 111 2e-19 seq4042 95.1 1e-14 >seq4563 Length=5383265 Score = 154 bits (170), Expect = 1e-32 Identities = 547/844 (65%), Gaps = 28/844 (3%) Strand=Plus/Minus Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731 ||||||||||| || || |||| ||| || || || || |||| ||||||||| ||| Sbjct 4594971 TTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCCG 4594912 Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791 ||||| | ||| |||||| | || | ||| | | || | | | | | ||| Sbjct 4594911 GTTTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTGGC 4594852 Query 153792 TGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCC 153851 | |||| | | ||||| ||||| |||||||| || || || || ||||| || ||| Sbjct 4594851 TCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGCC 4594792 Query 153852 ATGTCAATCAAGTTTTTACTGCTCA----TTTCCCACACAGTTTTGTAGACGGCTTTAAT 153907 || | ||| | | ||| | || ||||||| || |||||||| | | | || Sbjct 4594791 ATTTTAAT----TGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAAC 4594736 Query 153908 GTCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCG 153967 | | || || ||||| || || | || || | ||| || || ||| Sbjct 4594735 CTTCTGTGGAATAGTCTCAATATTTTGAAT--TGAACCC--CTGCTGGAAATGATTTGGT 4594680 Query 153968 ----CATGTGGTCGTCGTACAAATTTAGTCGACATAAATCT-TCAACCAAGTGCTGGTTA 154022 ||||| ||||| |||| | || | || || ||||| || || |||||| Sbjct 4594679 TCTTCATGTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAA-TGATGGTTA 4594621 Query 154023 ATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCG 154082 | || || || ||||| | || || | | ||| | ||| | || |||||||| Sbjct 4594620 ACCACCTGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCG 4594561 Query 154083 AACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAAC 154142 || |||||||||||||| | || ||||| |||| |||||| |||||| || |||| | Sbjct 4594560 AAAGATTCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGC 4594501 Query 154143 AAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAG 154202 | ||||| || | |||||| || || | |||| | | ||| | ||| | | Sbjct 4594500 AGGGAGTTCCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGG 4594441 Query 154203 TTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCA 154262 || || || || |||||||||||| ||||||| || || |||| || || Sbjct 4594440 TTCGTCGGAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCT-TCC 4594382 Query 154263 CT-ATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGC 154321 || |||| | ||| || || | | | || || || ||||||||||| || ||| | Sbjct 4594381 CTCATAAGTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCC 4594322 Query 154322 ATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGG 154381 |||||| | |||||| || || | || || | | |||| |||||||| || || Sbjct 4594321 ATAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGGCTCGCTTCATCACTTTCATATGG 4594262 Query 154382 CAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTG 154441 |||| || | | || ||||| || | || |||| || | || ||||| | || Sbjct 4594261 GAATCGCATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATG 4594202 Query 154442 TTTTAAATTCGA-TTCTTTGGCAGCCTC---CAGAGGATAATAATTGATATCGATAATTT 154497 | ||||| || ||| || ||||| ||| |||||| | ||||||||||| || | Sbjct 4594201 CCTCAAATTGGACTTCCTT----GCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCT 4594146 Query 154498 TATT 154501 | || Sbjct 4594145 TGTT 4594142 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | |||| ||||| || || || |||||||| || | Sbjct 1837954 ACCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 1838013 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | || || |||||||| || || || Sbjct 1838014 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1838073 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| ||||| ||| ||| ||| | || || | ||||| Sbjct 1838074 AATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCAC 1838133 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||||| ||||| |||||||| Sbjct 1838134 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1838181 Score = 111 bits (122), Expect = 2e-19 Identities = 537/846 (63%), Gaps = 11/846 (1%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || |||||||| ||||| ||||| || || | ||| | |||||||||| |||| Sbjct 4594053 GATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGAGTACTCGACAATTTCTGTGCAC 4593994 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || ||||||||| ||||||||| | || | ||| || || ||||||| || || Sbjct 4593993 AAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTTACTCTTCCTGTTGCAGGCATCC 4593934 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 ||| | | || ||||| | || ||||||||||| | ||||||||| ||||| || | Sbjct 4593933 TTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGCTTCAATAAT--GGCGAACCATA 4593876 Query 154767 --CTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTT 154824 | | |||| |||| | | || || |||||||| | || | | Sbjct 4593875 AGGATTGAGCCTTAACTGTTCGGTTGGCACGGCCCTCTTGCTCATATTTCACATATAACT 4593816 Query 154825 TTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATG 154884 ||||||| || | | || || | || || || || || ||||| | | Sbjct 4593815 TTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGGCATTTGTGCGGGCACATAAGGG 4593756 Query 154885 ACCACATTTCGTTTTG-TTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTAC 154943 |||| || || || | | ||| |||||||| || | ||| || | |||||| ||||| Sbjct 4593755 ACCA-ATCTCCATTGGCCTCTACACGTTTCATGAAAAGATCAGGTATCCACAAGGCGTAA 4593697 Query 154944 AACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCA 155003 || | ||| || || || ||||| ||| ||||| ||| | | || ||| ||| Sbjct 4593696 AAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAATTCA 4593637 Query 155004 TATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCT 155060 | | || | |||||| ||||| | || | || | || ||| || || ||| Sbjct 4593636 AAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAAGGCTCCTGGACGCTTGCCGCCT 4593577 Query 155061 CCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTG 155120 || |||||||| | |||| || |||||| | || | || || || ||| || || Sbjct 4593576 CCCTGATCCACATAACGCGCAACGTTATTGAAGACCCTCAGCATGGGAACCAGTCCATTG 4593517 Query 155121 GCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACG 155180 | || || || || || | ||||| | || || || ||||||||| | Sbjct 4593516 GAAGTTCCATTTGTTCCGCATATCGAAGTACCCTTTGCTCGGATACAATGAACATTTAGT 4593457 Query 155181 CCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCT 155240 || | || || | ||||||| || ||||| | | ||| || | | || ||| Sbjct 4593456 CCAATGCCACCAGCAGATTTAGAAATCATGGCACATTGCTCCACAGACTTAAAAATGCCT 4593397 Query 155241 TTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGCAG 155300 | |||| ||| || ||| || || | |||||| ||||||| || || || | Sbjct 4593396 TCGATGGAGTCGGCTGTCATGGTTAAAAGGAAACATGAAGATAGCTGCGGCCGATTTGTG 4593337 Query 155301 CCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAG-TTGTA 155359 | || ||||| | || || || || || || | | | ||| || || Sbjct 4593336 GCTGCTGCAAAAAGCGTTGGTGATGCATGAGTGAA-GTACCGCTCTGACAAAAGATTATA 4593278 Query 155360 AGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCAT 155419 ||||| | ||| ||||| || || ||||| || |||||||| |||||||||| ||| Sbjct 4593277 CGTTTCTACGGCCGCGTCGATATCTTCCCCGTGGATTCCGATCGCAACGCGCATCAACAT 4593218 Query 155420 GTGTTG 155425 ||||| Sbjct 4593217 ATGTTG 4593212 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | || | || || ||||| ||||| || || || | Sbjct 4507140 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGA 4507199 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| ||||||||||| || | || || |||||||| || ||||| Sbjct 4507200 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 4507259 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||||||| || || | | || ||||| ||| || | ||||| | || | Sbjct 4507260 AATTCCTTCTTTGTCCTG-AATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGA 4507318 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | ||| | ||||||||| || | || || ||||| || ||||| || Sbjct 4507319 CCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATGTT 4507370 >seq4475 Length=5362458 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || ||||| | || || | |||| || || || || || ||||||||||| | Sbjct 1656701 ACCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 1656760 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| |||||||||||||| | || || |||||||| || ||||| Sbjct 1656761 AAGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGG 1656820 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||| ||| ||| | || || | ||||| Sbjct 1656821 GATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCAC 1656880 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || ||||| || || || || || |||||||| Sbjct 1656881 CTCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1656931 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || || |||||||| || | | ||||| | ||| Sbjct 1656489 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCT 1656548 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || || ||||||||||| ||||| || || || || || Sbjct 1656549 TCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATACCCTCCTTGTCC 1656608 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || | |||||||| | ||| | |||| Sbjct 1656609 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTC 1656668 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| || ||||| Sbjct 1656669 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 >seq4042 Length=640736 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | ||| | || || || || || || ||||| || | Sbjct 503609 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGAC 503668 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || |||| || |||||||| || || | || | |||||||| || || || Sbjct 503669 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503728 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || || || || || ||| || ||| | || || | || ||| Sbjct 503729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACT 503788 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| |||||||| || |||||||||||||| || Sbjct 503789 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATT 503838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499613909460240