Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq4564 111 1e-19 seq4811 84.2 2e-11 >seq4564 Length=1015545 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||||| || | ||||| | || || | ||||| || || || || || ||| Sbjct 499989 CAGAACACCCTCTACGATTGGGTTCGGGACCATCGAGTTCATCATAAATATTCCGAGACG 499930 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 ||||| || ||||| ||||||||||| |||| ||||| |||||||||||||| ||| Sbjct 499929 GATGCCGATCCTCACAATGCCAACAGGGGCTTCTTCTTCTCCCACGTGGGATGGCTGATG 499870 Query 108568 ATGACCAAGGACCCCGACGTGATCTCGGCCG--GTCGAAAAATGGACATGACGGACATAT 108625 ||| ||| |||| || || |||| | || |||| | || ||||||| || || | Sbjct 499869 ATGTTGAAGCACCCGGATGT--TCTCCGACGTGGTCGTCAGATCGACATGAGCGATATTT 499812 Query 108626 ACTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAA 108674 | ||||| ||||| | ||| ||||||||||| ||||| || Sbjct 499811 TGGCTGATCCCGTGGTGCGATTCCACCAGAAGTACTTTATCCCTCTGAA 499763 >seq4811 Length=1929942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/237 (68%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCA--CCGCCCCGTTCA 108412 || ||||| |||||||| ||||| | ||||| ||||||||||| | | ||||| | Sbjct 901305 ACTGCCGGAGTCCATCGTCTGTGGTCGCACAAGGCCTACAAGGCTAAGCTGCCCC--TGC 901248 Query 108413 GGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGC 108472 | | ||||| ||| ||| ||| |||| ||||||| ||| | ||||| | Sbjct 901247 GTATCTTCCTCATGCTGTGCCAATCGCTGGCCTTCCAGAACAGCATTTGGGAGTGGACCC 901188 Query 108473 TCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACA 108532 || || | || |||||||||| | | ||||| ||||| || |||||| || Sbjct 901187 GTGACCATCGTGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCCCGTC 901128 Query 108533 GGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 | || |||| ||| | ||| |||||||| | ||| | ||| ||||||| |||| Sbjct 901127 GTGGCTTCTTCTTCGCCCACATGGGATGGTTGATGTGCAAGAAGCACCCCGATGTGA 901071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381749786974224