Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4563 199 4e-46 seq4720 114 1e-20 seq4471 113 4e-20 seq4475 98.7 1e-15 >seq4563 Length=5383265 Score = 199 bits (220), Expect = 4e-46 Identities = 937/1464 (64%), Gaps = 32/1464 (2%) Strand=Plus/Minus Query 152685 TCAACGGTAAACTGTTGTGTGTGCGCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTT 152744 || ||||| ||||| | | ||| || |||||||| |||| ||||||||| || ||| Sbjct 4594968 TCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCCGGTT 4594909 Query 152745 TTGAGGCCGCAGCG--CCACGAGTAATTGTGAATCGAAGTCATCACAGCGTACGTCGGTT 152802 ||||| || ||| ||| |||||| ||| || || |||| | || | || | Sbjct 4594908 TTGAGCCC--AGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTGGCT 4594851 Query 152803 GCGCCACGAACAGATTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCA 152862 || || | |||||| || || ||||||||||| || || ||| || || |||| Sbjct 4594850 CTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGCCA 4594791 Query 152863 TCTCAATCATGCGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTAT 152922 | | ||| || || | || ||||| |||||||||| | | ||| | | Sbjct 4594790 TTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAACCTTCT 4594731 Query 152923 CCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATTT 152982 || ||| ||||| || ||||| || ||| || | || || ||| || | Sbjct 4594730 GTGGAATAGTCTCAATATTTTGAATTGAACCCCTGCTGGAAATGATTTGGTTCTTCATGT 4594671 Query 152983 CGGGCGTGT-ACACGTTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGA 153041 | ||| ||| || ||| | | | | ||| | ||| | ||||| ||||| || Sbjct 4594670 CAT-CGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCACCTGG 4594612 Query 153042 AACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCG 153101 || ||||| | || |||| ||| ||| | ||| |||| | || || || |||||| Sbjct 4594611 AATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGATTCG 4594552 Query 153102 TTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTC 153161 || ||||| | || ||||| || | ||| || ||||| || |||| || || ||| Sbjct 4594551 TTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAGTTC 4594492 Query 153162 CGCAAGCCGTGCG-CTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGG 153220 || | |||||| || | | | ||||| | | ||||| ||||| || || ||| Sbjct 4594491 CGGACACCGTGCTTCTTTATCGAC-TCCTTTAGCTTTTGCCAGTCCCAGAGGTTCGTCGG 4594433 Query 153221 TGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGT 153280 || ||||||||||||||| || | |||| || | || || || || | || Sbjct 4594432 AACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAAGT 4594373 Query 153281 ACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATAT 153340 ||| ||| ||| || || | ||| || || || || | || |||||||| || Sbjct 4594372 TTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAAAT 4594313 Query 153341 GGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAG 153400 |||||| || || | ||| | | | |||||| || || || || || | |||| Sbjct 4594312 CGTTTCGAATATCTGCTGATTCAAGAGGCTCGCTTCATCACTTTCATATGGGAATCGCAT 4594253 Query 153401 CAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTT 153460 || | || || || || | ||||| | |||| ||| | ||| |||||| || || Sbjct 4594252 GAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAAATT 4594193 Query 153461 GCTGCGCCTCGCG-CTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGC 153519 | ||| || || || | ||||| ||| |||||| || |||||||| || | Sbjct 4594192 GGACTTCCTTGCCTCTGGC-AGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATTTC 4594134 Query 153520 GCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGC 153579 ||| || || | |||| ||||| | |||||| || ||| |||| || | Sbjct 4594133 TGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTATGTCTTTTC--CGGTGT 4594076 Query 153580 GTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGC 153639 | || | || | ||||| || |||| ||||| || || |||| || | | | Sbjct 4594075 G-ACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGG 4594017 Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 ||||| || || || | ||| | ||| |||||||| ||| ||| | ||| ||||| | Sbjct 4594016 AGTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGT 4593957 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 153759 | || || | ||||| || || ||||||||||| ||||| || || || ||||| | Sbjct 4593956 TACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTG 4593897 Query 153760 TTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAG--CGGCC 153814 ||| | || |||| || | | || || | | | | | | | | | ||||| Sbjct 4593896 CTTCAATAATGGCGAACC-AT--AAGGATTGAGC-CTTAACTG-TTCGGTTGGCACGGCC 4593842 Query 153815 CTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCC 153874 ||| ||| ||| | | || | ||||| || ||||| | ||| ||||| Sbjct 4593841 CTCTTGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCC 4593782 Query 153875 GGGACACTGATGCGGACACATCAGCGACCACATAT-CGTCGGCGTTGACGCGTCGCATGA 153933 || || | ||||| ||||| || ||||| || | | | ||| | || ||| ||||| Sbjct 4593781 AGGGCATTTGTGCGGGCACATAAGGGACCA-ATCTCCATTGGCCTCTACACGTTTCATGA 4593723 Query 153934 ACAGATCCGGCACCCAGAGCGCGT--ACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCC 153991 | ||||| || | ||| | |||| | | || ||| |||| | | || ||| ||| Sbjct 4593722 AAAGATCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTC--TCTTCCTTGCC 4593665 Query 153992 CATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGAC 154051 |||| || || | || | | ||| || | ||||||||| || | ||| | Sbjct 4593664 AGTGTTTTTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAAT 4593605 Query 154052 GGCCAGGGCACCTTTACGCTTTCCG---CCCTGATCGACGTGGCGCACCATATTGTTGAA 154108 || | ||| ||| |||||| ||| |||||||| || | ||| | | || ||||| Sbjct 4593604 AGCAAAGGCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAA 4593545 Query 154109 GACGCGCACCATGGGTTCCAGGCC 154132 ||| | || |||||| |||| || Sbjct 4593544 GACCCTCAGCATGGGAACCAGTCC 4593521 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || |||||||||||| | Sbjct 1837955 CCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1838014 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || || |||| |||| |||||||| || || || || Sbjct 1838015 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1838074 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || | | || | |||||| | | ||||||| Sbjct 1838075 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 1838134 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 || | || | || || || || || ||||| || || || ||||||| Sbjct 1838135 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGG 1838183 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433 |||||||| | ||| | |||||||| || ||||| || |||| ||| |||||||| | | Sbjct 4593279 TACGTTTCTACGGCCGCGTCGATATCTTCCCCGTGGATTCCGATCGCAACGCGCATCAAC 4593220 Query 154434 ATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGG 154493 || || ||||| ||||| |||| || || |||| || | ||| | ||||||| Sbjct 4593219 ATATGTTGCGGCCGTTCAGCGATCTTACCGTTTCTCTTTAACAAATAAGAACGTTCGAGG 4593160 Query 154494 GTTTTGTAACCGAAATACTTGTATTCAAAATC 154525 ||||| | |||||||| || || |||| || Sbjct 4593159 GTTTTAAACCCGAAATAATTATACCCAAAGTC 4593128 >seq4720 Length=6167446 Score = 114 bits (126), Expect = 1e-20 Identities = 236/348 (68%), Gaps = 5/348 (1%) Strand=Plus/Plus Query 57110 CAATGCCGATGATGCCGCAGCCGAGACGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAGCG 57169 ||||||| || | ||||||||| | || | || | |||||| || | |||||||||| Sbjct 2981566 CAATGCCAATAACGCCGCAGCCAATGCGAGCACCAGCGTTGCCCGTAGACTTGCTCAGCT 2981625 Query 57170 GATGTTCGGTGAGGCCGAGATCGTCGCGCTTCG-CGTGAACCACCAGACTGCGGCCGACG 57228 ||| | ||||||||| ||| || ||| |||| ||||||| | |||| || | | Sbjct 2981626 CGTGTCCACCCTTGCCGAGATCATCG-GCATCGGCGTGGACCACCACAGTGCGTCCAATG 2981684 Query 57229 ACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCG 57288 | ||| | ||||||| || || ||| | || | || || | ||| || | Sbjct 2981685 ATGCTGTCAGCGCCGAAGAGTGTGATCTTGGAATCTGTAATGCTGACCTTTGTGGGGCAG 2981744 Query 57289 TTGGACACTTTGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGA 57348 | | ||||||| | |||||||| ||||| | ||| || | || ||| Sbjct 2981745 TCTC---CGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGGCGGTTTTCGTCGACGGGG 2981801 Query 57349 GCGCCGTGTTCGCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTG 57408 || ||||| || ||||| || ||||| ||| |||| |||| |||| || ||| || Sbjct 2981802 GCACCGTGCTCCTTGCCGTACGGATTAAAATGCGGTCCCGACGACATGCACCCATTGGTG 2981861 Query 57409 GTGTCGCCGAACTCGTGAACGTGAAATCCGTGCAGGCCCCTCGGCAGA 57456 |||| ||||| || || || || ||||||||||||||| | | |||| Sbjct 2981862 TTGTCCCCGAATTCATGCACATGGAATCCGTGCAGGCCCTTGGCCAGA 2981909 >seq4471 Length=3711889 Score = 113 bits (124), Expect = 4e-20 Identities = 303/454 (67%), Gaps = 11/454 (2%) Strand=Plus/Plus Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 ||||| || | ||||| ||| || |||||| | || ||| ||||||||| ||| | Sbjct 603893 GAGCGAATTATCGCCTTTGCCGCCGTAGAGGGCATCTTCTTTAGCGGCAGCTTCGCCTCT 603952 Query 52455 ATCTTTTACATTAA--AACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGA 52512 || || | | || |||| ||| | ||||| |||||||| ||| |||||| | | Sbjct 603953 ATTTTCTGGCTAAAGAAACGT--GGCCTGATGCCGGGCCTGACATTCTCCAACGAACTTA 604010 Query 52513 TATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG- 52571 |||| || |||||||| ||||| |||||||| | | | | || | |||| Sbjct 604011 TATCCCGGGACGAAGGCTTGCACTGCGACTTTGCCGTCTTGATGTTCCAGCACCTCGTGC 604070 Query 52572 ACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAA 52631 | ||| || || | || ||| ||| || || || |||||||| || || Sbjct 604071 AGCGACCAAAGCGAGAGCG-CATCATC--GAG-ATTATCCGCGACGCGGTGGCCATTGAG 604126 Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCAT 52690 ||||||| |||| | || || || || | || | |||||||| ||| | || Sbjct 604127 CAGGAGTTCCTTACAGATGCCCTTCCCGTAAACTTGATCGGCATGAATTGCGACCTG-AT 604185 Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTA 52750 || | |||||||||||||||| || || ||| || ||||| |||| || |||| Sbjct 604186 GTCCCAGTACATCGAGTTTGTCGCAGACCGTTTGCTGGTGGAGCTTGGTGTTGGAAAGAT 604245 Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810 || |||| | || || || | || ||| | | || ||||| || || ||||| || Sbjct 604246 CTACAACACCAAGAACCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAA 604305 Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTATAAGCGT 52844 ||| ||||||||| || |||||||| ||||| Sbjct 604306 CTTCTTCGAGAAGAAGGTGGGCGAGTACCAGCGT 604339 >seq4475 Length=5362458 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || |||||||||||| | Sbjct 1656474 CCTCCGCGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1656533 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||| || || |||| |||| |||||||| ||||| ||||| Sbjct 1656534 AGTGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 1656593 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | |||||||| | |||||| Sbjct 1656594 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACT 1656653 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || || || |||||||| Sbjct 1656654 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496231718577120