Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq1821 87.8 7e-13 seq1744 86.0 2e-12 >seq1821 Length=3805 Score = 87.8 bits (96), Expect = 7e-13 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34532 GCCTGCTCCAGCGCATCCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCC 34591 ||||| || || || || |||||||| || ||| || | ||||| ||| ||| Sbjct 2882 GCCTGTTCAAGGGCGTCGAGCACGAACTGGGTGGTCATGGAAGTCGAGACTTTCCAGCCC 2941 Query 34592 ACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTG 34651 ||||| | ||| ||||||||||||| ||||| |||||||| | ||| | ||| || Sbjct 2942 ACGATCCTGCGGGCGAACACATCAATGACGAACGCTACATAGACCATGCCATTCCAGGTC 3001 Query 34652 CTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGCGGC 34711 ||| || ||||| || | ||||| ||||||| || | || ||| ||||||| | Sbjct 3002 TGGACATAGGTAAAGTCCGAGACCCAGAGCTGGTTGGGGCTCTCGGCCCGGAACTGCCGG 3061 Query 34712 TTTACGCGGTC 34722 || || | ||| Sbjct 3062 TTGACCCTGTC 3072 >seq1744 Length=1091 Score = 86.0 bits (94), Expect = 2e-12 Identities = 142/204 (70%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 36225 CCAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACCGAGCGCAAACTGGCTGAAGGGGT 36284 ||||||||||| || ||| || || || || |||| || ||||| ||||| || Sbjct 979 CCAGGGCTGGACGCTCTCCGGAGCTATCAAGACAGCCGAACGGAAACTCGCTGACGGCAG 920 Query 36285 GCTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGTGTCGGCAATGCCCGGGTGGAGCC 36344 ||| | ||| ||| |||||| | ||||| ||| ||| |||| ||| ||| ||| | Sbjct 919 CCTGCTCCATTGTGGGCAGCCCATCATGGCGTGGGCCGTCAGCAACGCCAAGGTAGAGGC 860 Query 36345 TAAAGGTAACGCCATTCTTATCACCAAACAG---GCCAGTGGACGGGGAAAAATTGACCC 36401 || |||||||| | || ||||| ||| ||| || | | ||||||||||| Sbjct 859 GCGTGGCAACGCCATCATCATTACCAAGCAGGCTGCCGGTTATCTG---AAAATTGACCC 803 Query 36402 GCTGATGGCGCTGTTCAATGCGGT 36425 ||| ||| | ||| |||| ||||| Sbjct 802 GCTCATGTCACTGCTCAACGCGGT 779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198733619739448