Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4042 152 5e-32 seq4563 136 4e-27 seq4475 114 1e-20 seq4720 102 8e-17 >seq4042 Length=640736 Score = 152 bits (168), Expect = 5e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||||| |||| |||||||| | |||||||| || ||||||||||| ||| Sbjct 502922 GCGCCACCGCGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCG 502981 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || || || ||||| ||||||||| ||||||| ||||||||||| || Sbjct 502982 GACAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGG 503041 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 503042 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCA 503101 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || | || | || |||||||| || || || ||||| ||||||||| || Sbjct 503102 ACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATGCCT 503155 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||||||| | |||||||| || || |||||||| ||| | Sbjct 503609 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGAC 503668 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||||||| ||||||| ||||||||||| || || Sbjct 503669 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503728 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| |||||| | | ||| ||| Sbjct 503729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACT 503788 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| ||| || || ||||| ||||| Sbjct 503789 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 503835 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||||||| | |||||||| || || |||||||| ||| | Sbjct 503153 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGAC 503212 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||||||| ||||||| ||||||||||| || || Sbjct 503213 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503272 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | |||| |||||| | | ||| || Sbjct 503273 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCGGAAGGCTCAACC 503332 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || |||||||| || || || ||||| ||||||||| Sbjct 503333 TCCAAAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATG 503380 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | ||||| || || || |||||||| ||| | Sbjct 503381 CCACCACGCAGACGGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAGTCGGAC 503440 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||||||| ||||||| ||||||||||| || || Sbjct 503441 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503500 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| |||||| | | ||| || Sbjct 503501 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACC 503560 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | || | || |||||||| || || || ||||| ||||||||| || Sbjct 503561 TCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATGCCT 503611 >seq4563 Length=5383265 Score = 136 bits (150), Expect = 4e-27 Identities = 683/1072 (64%), Gaps = 32/1072 (3%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| ||||||||||| | || | || || || ||||| |||||||| ||||| ||||| Sbjct 4594969 GTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCCGGT 4594910 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA-TGACCGAGTACGTGGGTT 145837 |||||| | ||| | ||||||||||||| || || | | | || | || | Sbjct 4594909 TTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCA-TAGTTTGGCT 4594851 Query 145838 CGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCA 145897 | || ||| | ||| | || || |||||||| || || | | | || || ||||||| Sbjct 4594850 CTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGCCA 4594791 Query 145898 TGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCT 145957 | | || || |||| |||||||| ||||||| | || || || | || Sbjct 4594790 TTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAACCTTCT 4594731 Query 145958 GGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATT 146017 | || || ||||| || || | || || | || | |||| ||| || | Sbjct 4594730 GTGGAATAGTCTCAATATTTTGAATTGAACCCCTGCTGGAAATGATTTGGTTCTTCATGT 4594671 Query 146018 CTGGAGTGT---AAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCT 146074 | | || | | || || || | | || | | | || ||||| ||||||| Sbjct 4594670 C---ATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCACCT 4594614 Query 146075 GAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACT 146134 | || ||||| | ||||| | || ||| | || | || |||||||||| || | Sbjct 4594613 GGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGATT 4594554 Query 146135 CGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGT 146194 ||||||| || | ||||| || || | || || ||||| || ||||||| |||| Sbjct 4594553 CGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAGT 4594494 Query 146195 TTCTCACGCCGTG--TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATC 146252 | | || ||||| ||||| ||| ||| ||| || ||| | ||| | | | Sbjct 4594493 TCCGGACACCGTGCTTCTTT--ATCGACTCCTTTAGCTTTTGCCAGTCCCAGA---GGTT 4594439 Query 146253 CGTGGGATAGATATTGT---AGTTGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATT 146309 ||| ||| | |||| | ||||||| |||| | | || | | ||||| Sbjct 4594438 CGTCGGA---ACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCC 4594382 Query 146310 CTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGA 146369 ||| || | ||| || || || ||||||| || | ||| || || ||||||| |||| Sbjct 4594381 CTCATAAGTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCC 4594322 Query 146370 AAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGG 146429 | |||| || || || ||| | || | | || || || || || || || || Sbjct 4594321 ATAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGGCTCGCTTCATCACTTTCATATGG 4594262 Query 146430 GATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGT 146488 || |||| | || | || || || || | ||||| | |||| || |||||||| | Sbjct 4594261 GA-ATCGCATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGAT 4594203 Query 146489 GTTTCTTGTTACTGTTCGCAGCGCCCG-CAGTGGGATAGTGGTTGCTGTCGATGATCTTG 146547 | || || ||| || | | ||| || ||| |||| | ||||| |||||| Sbjct 4594202 GCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGG-ATAAAAGTTGATATCGATTATCTTG 4594144 Query 146548 TTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAAT-GTTTT 146606 |||||||| | || | || || | || || | | |||| || | Sbjct 4594143 TTGAGATTTCTGGTAACCGTCTTGGTGACTTCCTTTAGTT-----TTTTGAAATCGTATG 4594089 Query 146607 AGTTTTAACGT-TGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCT 146665 |||| || |||| || |||| | || || || ||||||||||| || ||| ||| Sbjct 4594088 TCTTTTCCGGTGTGACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCT 4594029 Query 146666 CGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCA 146725 | ||| | | | |||| ||||| || | ||| | ||| ||||| || ||| |||| | Sbjct 4594028 CATCCGGGGAGGAGTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAA 4593969 Query 146726 AAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 ||| | |||||||| | ||||||||| |||||| ||||||| ||||| Sbjct 4593968 CATTCTGCTGGTTACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGG 4593917 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || || || ||||| ||| | Sbjct 1837955 CCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1838014 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||||| ||||||||||| || || Sbjct 1838015 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1838074 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| |||||| ||| | | |||| |||||||| | ||| || Sbjct 1838075 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 1838134 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | ||| | || |||||||| || ||||| || || || ||||||| Sbjct 1838135 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGG 1838183 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||||| || | || |||||||| |||||||| || || Sbjct 4507138 GCACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCA 4507197 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| ||| || ||||| || |||||| |||||| ||||||||||| ||| Sbjct 4507198 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGA 4507257 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || || || |||||| ||| | | || |||| | ||||| || |||| | || Sbjct 4507258 GGAATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTC 4507316 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| || | || | || ||||| || || || || || || ||||||||| Sbjct 4507317 GACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATG 4507368 >seq4475 Length=5362458 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || | |||||| || | || ||||| || || || ||||| ||| Sbjct 1656473 TCCTCCGCGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1656532 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || ||||| ||||| ||| |||||| |||||||| || ||||| Sbjct 1656533 CAGTGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGG 1656592 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | | || | |||||| | ||| || Sbjct 1656593 GATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCAC 1656652 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || ||||| ||||| || || || || |||||||| Sbjct 1656653 TTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || || | ||||| || | || ||||| || || || ||||||||| Sbjct 1656702 CCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 1656761 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||||| ||||||||||| ||||| Sbjct 1656762 AGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 1656821 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||| || ||| | | || | |||||||| | ||| || Sbjct 1656822 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACC 1656881 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||| || || ||||| |||||||| Sbjct 1656882 TCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 1656928 >seq4720 Length=6167446 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 50654 GCTTCTATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTG 50713 || || ||||||||||||||||| | |||||||| || || ||| || ||||| | Sbjct 2981754 GCCTCAATGTTGCCCAGATCGCCCAGGTGGCGGTTTTCGTCGACGGGGGCACCGTGCTCC 2981813 Query 50714 CGGCCCAACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAAT 50773 ||| |||||||||| ||| || | |||| |||| || ||| | |||| |||||| Sbjct 2981814 TTGCCGTACGGATTAAAATGCGGTCCCGACGACATGCACCCATTGGTGTTGTCCCCGAAT 2981873 Query 50774 TCGTGCACGTGGAACCCGTGAAAGCCCTT 50802 || ||||| ||||| ||||| | |||||| Sbjct 2981874 TCATGCACATGGAATCCGTGCAGGCCCTT 2981902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475471402163040