Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4563 295 6e-75 seq4042 95.1 1e-14 seq4475 84.2 2e-11 >seq4563 Length=5383265 Score = 295 bits (326), Expect = 6e-75 Identities = 951/1462 (65%), Gaps = 48/1462 (3%) Strand=Plus/Plus Query 123235 CCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCA 123291 |||||||| | || | |||||||| | ||| | || || ||||| |||||| || Sbjct 4593531 CCATGCTGAGGGTCTTCAATAACGTTGCGCGTTATGTGGATCAGGGAGGCGGCAAGCGTC 4593590 Query 123292 AAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATT 123351 ||| || | || || || || || || |||||| |||||| | || ||| | | Sbjct 4593591 CAGGAGCCTTTGCTATTTACCTGGAGCCCTGGCACTCTGATGTCTTTGAATTTCTGGAAC 4593650 Query 123352 TAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGG 123411 | || |||| || |||||| || ||||| ||| | || ||||| || ||| Sbjct 4593651 TCAAGAAAAACACTGGCAAGGAAGAGAATCGCGCCCGAGATCTTTTTTACGCCTTGTGGA 4593710 Query 123412 TACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCG 123471 |||| ||| | || ||| ||| ||| | | | | || | ||||| || ||||| || Sbjct 4593711 TACCTGATCTTTTCATGAAACGTGTAGAGGCCAATGGAGATTGGTCCCTTATGTGCCCGC 4593770 Query 123472 ATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAAT 123531 | || || ||| | ||| || | ||| || | ||||| |||| || | | ||| Sbjct 4593771 ACAAATGCCCTGGCCTTCACGATGTATGGGGCGATGAATTTGAAAAGTTATATGTGAAAT 4593830 Query 123532 ACGAGCGCGAAGGCA-----AACAGGTTAGTCA-GGTTCCGGCACGTGATTTGTTCAAAT 123585 | |||| || ||| ||| | ||| | || || | | || |||| Sbjct 4593831 ATGAGCAAGAGGGCCGTGCCAACCGAACAGTTAAGGCTCAATCC--TTATG-GTTCGCCA 4593887 Query 123586 TTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCA 123645 ||||| ||| ||||||| ||||| |||| ||||| ||||||| ||| || ||||||| Sbjct 4593888 TTATT---GAAGCACAAGTGGAAACTGGAAATCCGTATATGCTCTTCAAGGATGCCTGCA 4593944 Query 123646 ACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAA 123705 ||||||| | || ||| || | || || || ||||| ||||| | ||| | |||| Sbjct 4593945 ACAGGAAGAGTAACCAGCAGAATGTTGGCACCATTAAATGCAGTAACTTGTGCACAGAAA 4594004 Query 123706 TTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGA 123765 || |||| ||| | | ||| | | || || ||||| ||||| || ||| | | Sbjct 4594005 TTGTCGAGTACTCCTCCCCGGATGAGATTGCAGTTTGTAACTTGGCATCCATTGCTCTTA 4594064 Query 123766 A-----TCGTTGCGTCGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCA-TAACAA 123819 | | || | || ||| | | | ||||| ||| || ||| | | | || | Sbjct 4594065 ACATGTTTGTCACACCGGAAAAGACA--TACGATTTCAAAAAACT-AAAGGAAGTCACCA 4594121 Query 123820 AAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAG 123879 | || || | ||| | ||||| || |||||| | || |||||||| || || | Sbjct 4594122 AGACGGTTACCAGAAATCTCAACAAGATAATCGATATCAACTTTTATCCGCTGCCAGAGG 4594181 Query 123880 CGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACG 123939 | | ||| ||||||| || | || || || | || |||| || || || || | Sbjct 4594182 CAAGGAAGTCCAATTTGAGGCATCGCCCCGTGGGCATCGGAGTTCAGGGCTTTGCTGATG 4594241 Query 123940 CGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAA 123999 | || | | |||| | || || ||||| || ||||| | | | ||| ||| | Sbjct 4594242 CATTAATTCTCATGCGATTCCCATATGAAAGTGATGAAGCGAGCCTCTTGAATCAGCAGA 4594301 Query 124000 TAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACG 124059 || |||||| ||||| || || |||||||| || || || ||| | || | || | | Sbjct 4594302 TATTCGAAACGATTTACTATGGGGCTTTGGAAGCCAGTTGTGAATTAGCTCAGATCGAAG 4594361 Query 124060 GCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGT 124119 || | ||||||| ||| | ||| ||||||| ||| ||| ||||||||||||||||||| Sbjct 4594362 GCCCATACGAAACTTATGAGGGAAGCCCGGTAAGCAAAGGAATTTTGCAGTACGACATGT 4594421 Query 124120 GG---AATGCTACACCGACAAATTTGTGGGACTGG----AGCGTTTTAAAACAACGCATA 124172 || || | | ||||| || | ||||||||| ||| |||| | ||| Sbjct 4594422 GGGACAAAGTT---CCGACGAACCTCTGGGACTGGCAAAAGC----TAAAGGAGTCGATA 4594474 Query 124173 TCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCT 124232 || ||||||| | || ||||| ||| |||| || ||||| || ||| | |||||| Sbjct 4594475 AAGAAGCACGGTGTCCGGAACTCCCTGCTGGTTGCTCCTATGCCAACAGCATCTACTGCT 4594534 Query 124233 CAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGA 124292 || ||| | || ||||||||||| |||||||||| |||| ||| | || || || Sbjct 4594535 CAGATTATGGGCAACAACGAATCTTTCGAGCCGTATACTACTAATATTTATACCAGAAGA 4594594 Query 124293 GTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTA 124352 || | | ||||| || || ||| | || ||||||||| || |||||| | | | Sbjct 4594595 GTTCTGTCTGGCGAATTCCAGGTGGTTAACCATCATTTGTTGAGGGACTTGACTGAGCTG 4594654 Query 124353 AATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGC 124412 | |||| || || ||||| ||| |||| ||| | | | || | || Sbjct 4594655 GACTTGTGGGACGATGACATGAAGAACCAAATCATTTCCAGCAGGGGTTCAATTCAAAAT 4594714 Query 124413 ATCGCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAA----TGAA 124468 || | | ||||| | | || | || ||||||||||| ||||||| || Sbjct 4594715 ATTGAGACTATTCCACAGAAGGTTCGTGACCTTTACAAAACCGTTTGGGAAATCTCTGTG 4594774 Query 124469 AAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATC 124528 || | || |||| ||||||||| || || || |||| | ||||| ||||| || Sbjct 4594775 AAGTCCAC----AATTAAAATGGCCGCTGATCGTGGTGCGTTTATAGATCAGAGTCAGTC 4594830 Query 124529 TTTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGC 124588 ||||| | |||||| || || | ||| | |||| ||||||| | || | Sbjct 4594831 CTTTAATATACATGTAGCAGAGCCAAACTATGGAAAACTGACGTCCATACACTTTTACTC 4594890 Query 124589 GTGGAGCAGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATG 124647 |||| ||| || |||||||| || |||||||| | | || || || || || ||| Sbjct 4594891 CTGGA-AAGCTGGGCTCAAAACCGGAATGTATTATCTGCGGACAAAGCCAGCTGCGAATG 4594949 Query 124648 CCATTCAATTTACCGTCGACAA 124669 ||||||| || ||||| ||||| Sbjct 4594950 CCATTCAGTTCACCGTGGACAA 4594971 >seq4042 Length=640736 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | | ||| | ||||| || || ||||| |||||||| || ||| Sbjct 503606 ATGCCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCG 503665 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||| || ||||| ||| | ||||| || ||||| || || Sbjct 503666 GACAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGG 503725 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || || || || |||| || | || | ||||||||||| ||| Sbjct 503726 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCGGAAGGCTC 503784 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || ||||| || | ||| || || ||||||||||| Sbjct 503785 AACTTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 503835 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | || || | ||||| || || ||||| || ||||| || ||| Sbjct 502925 CCACCGCGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 502984 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || |||| || ||||| ||| | ||||| || ||||| || || || Sbjct 502985 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503044 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || ||||| || || |||| || | || | ||||||||||| ||| || Sbjct 503045 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCGGAAGGCTCAAC 503103 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||| | || |||||||| || || || ||||| || ||||| Sbjct 503104 CTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 503151 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | | ||| | ||||| || || ||||| |||||||| || ||| Sbjct 503150 ATGCCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCG 503209 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||| || ||||| ||| | ||||| || ||||| || || Sbjct 503210 GACAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGG 503269 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || || || || || | || | || | ||||||||||| ||| Sbjct 503270 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAA-CGTTCTCGATGGTGTCGGAAGGCTC 503328 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || |||||||| || || || ||||| || ||||| Sbjct 503329 AACCTCCAAAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCAT 503379 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||||| || |||||||| |||||||| || ||| | ||| || |||| || Sbjct 503404 ATGCAAAGTAGATTCCTTCTGGATATTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTG 503463 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||||| ||| | ||||| || ||||| || || || || || || || || || || || Sbjct 503464 CTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 503523 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 |||| || | || | ||||||||||| ||| || || | ||| | || ||||||| Sbjct 503524 GGCCTTGA-CGTTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGG 503582 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||| || ||||| Sbjct 503583 TGAGGGTCTTCACAAAGATCTGCAT 503607 >seq4475 Length=5362458 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||||||||| | | ||| | || || || || ||||| ||||| || || ||| Sbjct 1656471 ATTCCTCCGCGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1656530 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| || | | ||| || | || ||||| ||| | |||| || |||||||| | Sbjct 1656531 --GACAGTGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTG 1656588 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || || || || || || || || || | || | ||||||||| | || Sbjct 1656589 GAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCT 1656648 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||| | || ||||| || || || || || || || ||||| Sbjct 1656649 CCACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451975254902160