Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4471 192 9e-44 seq4563 131 3e-25 >seq4471 Length=3711889 Score = 192 bits (212), Expect = 9e-44 Identities = 546/827 (66%), Gaps = 28/827 (3%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| ||||| || |||| || || |||||||| ||| Sbjct 604324 CACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAA 604265 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| || ||| ||| || || || || ||||||| | |||||| || Sbjct 604264 AGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGCTCCACCAGCAAACGGTCTGCGAC 604205 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 ||| |||||||| ||||| | || || || || || | || | ||||| || || Sbjct 604204 AAACTCGATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAGTTTACGGGAAGGGC 604145 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGTT 159881 || | || ||||||| |||||| | ||||| ||| | ||||| ||| || || | Sbjct 604144 ATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATAATCT-CGATGATGCGCT 604086 Query 159882 CGTACCCCGGCTTG--CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTG 159939 | || ||| | | | | ||| || |||| | | |||||||||||||| Sbjct 604085 CT-----CGCTTTGGTCGCTGCACGAGGTGCTGGAACATCAAGACGGCAAAGTCGCAGTG 604031 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || || |||||||| || || | |||||||| | | ||||||||||| | ||||| Sbjct 604030 CAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTCAGGCCCGGCATCAGGCCACG 603971 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 || ||||| ||||| | || || |||||||| ||||| ||||| ||||| || Sbjct 603970 TTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAGAAGATGCCCTCTACGGCGGC 603911 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGC---GTTGGTGTCATG-GGTCCACCTTTTGG 160115 ||| || | | | ||| |||||| ||| |||| ||| | |||| | Sbjct 603910 AAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGG----ATGAGATCCAGGAAAGCG 603855 Query 160116 CCCATTCAGCCTT---CTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGT 160172 |||| || ||||| |||| | || |||||| ||||| ||| || |||| | Sbjct 603854 CCCAGTCCGCCTTGCGCTTTAC--AGC-CGGCATCGTCTCGATGGCATTGAACAGGTACT 603798 Query 160173 CCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCA 160232 || ||| | | ||| ||| || | ||||| |||||||| | ||||| Sbjct 603797 CCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATACATTTCGGAGTGCA 603738 Query 160233 CATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCC 160291 | ||||| || || ||||| || |||||| | ||||| ||| ||| |||||| Sbjct 603737 CGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGTGAT-CTGAACCTCC 603679 Query 160292 TGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCC 160351 || | || | | | |||| || | || || | || |||| || |||||||| ||| Sbjct 603678 TGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGCGGCAAAGAAGGCC 603619 Query 160352 AACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACG 160411 | |||||| |||||||| || | |||||| | || || | | ||||| |||| Sbjct 603618 AGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGC---GATGCCAGTCCGTCAGA 603562 Query 160412 TCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGC 160458 || | || || ||| || || ||| | |||| || ||||| ||| Sbjct 603561 TCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAGCCTCAGC 603515 >seq4563 Length=5383265 Score = 131 bits (144), Expect = 3e-25 Identities = 396/603 (66%), Gaps = 18/603 (3%) Strand=Plus/Minus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 |||||||||| |||||||||||||| ||| | || ||| | | | |||||| ||||| | Sbjct 4594973 TCTTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTC 4594914 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 |||| || || || | ||| ||| | ||| ||||| | |||||| | ||| | Sbjct 4594913 CGGTTTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTG 4594854 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 | || || | || || || | ||||| || || || || ||| || || ||||| ||| Sbjct 4594853 GCTCTGCTACATGTATATTAAAGGACTGACTCTGATCTAT-AAACGCACCACGATCAGCG 4594795 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 ||||| || || ||| |||| || || ||||| || || ||| | | ||| | Sbjct 4594794 GCCATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAACC 4594735 Query 204077 TGTTGAGGCACA-TCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | || || | | ||| | | | || || || || || || || | | || Sbjct 4594734 TTCTGTGGAATAGTCT--CAATATTTTGAATTGAACCCCTGCTGGAAATGATTTGGTTCT 4594677 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | || || |||||| | ||| | ||| |||| || || || |||| | | Sbjct 4594676 TCATGTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCA 4594617 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| || || || ||||| || | || ||| | | || | || | || ||||| | Sbjct 4594616 CCTGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAG 4594557 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 ||||||||||| | ||||||||| || || || ||||| ||||| | ||||||| Sbjct 4594556 ATTCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGG 4594497 Query 204315 AGTTGCGCACACCG----TATTTTTGGA--CCCTGCGCTTCAGAGAGGTCCAGTCGTGCA 204368 |||| || |||||| | ||| | || || | |||| | || |||| || | Sbjct 4594496 AGTTCCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCG 4594437 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 ||| | ||| | ||||||||||| |||| || || |||| || || ||||| | Sbjct 4594436 TCGGA---ACTTT---GTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTC 4594383 Query 204429 CCT 204431 ||| Sbjct 4594382 CCT 4594380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795106039529760