Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4471 405 5e-108 seq4563 149 6e-31 seq4042 127 2e-24 seq4475 111 2e-19 >seq4471 Length=3711889 Score = 405 bits (448), Expect = 5e-108 Identities = 589/825 (71%), Gaps = 8/825 (1%) Strand=Plus/Minus Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 || || ||||||||||| ||||| || || || || ||||| |||| || || | | | Sbjct 604335 TGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCC 604276 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726 || |||| || ||||| ||||||||| ||| | || || || |||| Sbjct 604275 ATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGCTCCACCAGCAAA 604216 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786 | ||| || || ||||||||||| || ||||| |||||||| | || | || Sbjct 604215 CGGTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAGTTT 604156 Query 132787 ACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCC 132846 || || || || || || || || ||||| ||||| ||||||||| || || || Sbjct 604155 ACGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATAATCTCG 604096 Query 132847 CTAACGCGCGCCGCGCTC-GGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTC 132905 | | |||| | |||| || || ||||| | |||| |||||||||| |||||||| Sbjct 604095 ATGATGCGCTCT-CGCTTTGGTCGCTGCACGAGGTGCTGGAACATCAAGACGGCAAAGTC 604037 Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965 ||| |||||||| ||||||| ||| || ||||||||| ||| |||| ||| ||||| || Sbjct 604036 GCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTCAGGCCCGGCATCAG 603977 Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025 ||| ||||| || ||||| || || | |||||| ||||| |||||||| |||||| || Sbjct 603976 GCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAGAAGATGCCCTCTAC 603917 Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085 ||| || || || | | ||||| || || ||||| ||| | ||||||| || Sbjct 603916 GGCGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGGATGAGATCCAGGAAAG 603857 Query 133086 CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAG 133145 |||||| || ||||| || || ||||||||| |||||||| || ||| | | | Sbjct 603856 CGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGCATTGAAC--AGGTAC 603799 Query 133146 TTTCTCTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGT 133203 | | || | ||| || | ||| |||||||| ||| ||||||||| ||||| Sbjct 603798 TCCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATACATTTCGGAGTGC 603739 Query 133204 ACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCT 133263 ||||| ||||| ||||| || || ||||| ||||| || ||||| | ||| || || Sbjct 603738 ACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGTGATCTGAACCTCC 603679 Query 133264 TGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGC 133322 || || ||| ||||| ||||| || ||||| ||||| || ||| ||||| || ||||| Sbjct 603678 TG-GCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGCGGCAAAGAAGGC 603620 Query 133323 CAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTC 133382 ||||||||| |||||| || ||||||| ||| || | ||| | |||||| | || Sbjct 603619 CAGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCAGTCCGTCAGATC 603560 Query 133383 CTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||||||||| ||||| ||||| || ||||| || || ||||| || Sbjct 603559 CTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAGCCTCAGC 603515 >seq4563 Length=5383265 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| ||||| ||||||||| | || || ||| | | Sbjct 1838181 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 1838122 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| ||||| ||||| |||||| | || || Sbjct 1838121 GACACCATCGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 1838062 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | ||||| || |||||||||| Sbjct 1838061 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 1838002 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| || || |||||||| ||| || | || || Sbjct 1838001 ATCCAGAAGGAGTCGACCCTTCACTTGGTGCTCCGTCTGCGTGGTGG 1837955 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||||||||| |||||||| | || ||||| | Sbjct 4507370 AACATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCT 4507311 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | |||| || || | |||||||| |||||||| | || Sbjct 4507310 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 4507251 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | ||||||||| ||||| Sbjct 4507250 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 4507191 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || || || | || |||| |||||||||||| || | || || Sbjct 4507190 AATATTCAGAAAGAGTCCACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 4507141 >seq4042 Length=640736 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| || || | || ||||| ||||||||| | || || ||| | Sbjct 503838 AATATGCAAATTTTCGTGAAGACTTTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCT 503779 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || | || |||| ||||| |||||||| ||| | || Sbjct 503778 TCCGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGA 503720 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| | || | ||| || || |||||||| |||| || ||| | |||||| Sbjct 503719 TCAGCAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTA 503660 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| ||||| ||||| | || ||||||||||||| ||| || | || ||| Sbjct 503659 CAATATCCAGAAGGAGTCTACTTTGCATTTGGTGCTCCGTCTGCGCGGAGGC 503608 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| | || || ||| | || Sbjct 503379 ATGCAGATCTTTGTGAAGACCCTTACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 503320 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||| | || |||| ||||| |||||||| ||| | || || Sbjct 503319 GACACCATCGAGAACG-TTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 503261 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| |||| || ||| | ||||||||| Sbjct 503260 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAA 503201 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||||||||||| ||| || | || ||| Sbjct 503200 TATCCAGAAGGAGTCTACTTTGCATTTGGTGCTCCGTCTGCGCGGAGGC 503152 >seq4475 Length=5362458 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || || ||| | || Sbjct 1656700 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTGGAGCCATCC 1656641 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || || | ||||| Sbjct 1656640 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAG 1656581 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || || | ||||| || |||||||||| Sbjct 1656580 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGCACACTGTCCGACTACAAC 1656521 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || || |||||||| ||| Sbjct 1656520 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGT 1656485 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || | || || || |||||||| | || || ||| | Sbjct 1656931 AAAATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACTCTGGAGGTGGAGCCT 1656872 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| || || | || Sbjct 1656871 TCGGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCAGAT 1656812 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| ||||| || || | ||||| || ||| ||| Sbjct 1656811 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACTCTTTCCGATTAC 1656752 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || || || ||||| || |||||| | || || Sbjct 1656751 AACATCCAGAAGGAGTCCACTCTTCACTTGGTTCTCCGTTTGCGTGGAGG 1656702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500141876816640