Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4807 131 7e-25 seq4563 102 3e-16 seq4465 100 1e-15 seq4190 95.1 5e-14 seq980 95.1 5e-14 seq4811 86.0 2e-11 >seq4807 Length=1189310 Score = 131 bits (144), Expect = 7e-25 Identities = 355/541 (66%), Gaps = 2/541 (0%) Strand=Plus/Plus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 ||| |||||||| ||||| || ||||| | || || || ||||| | |||| ||||||| Sbjct 509758 AGCTATTGGAATCGATCTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAACATGGAAA 509817 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 || || || ||||| || ||||||||| || || || || || | || || || Sbjct 509818 AGTGGAGATCATAGCCAACGACCAAGGAAACCGTACCACGCCCTCGTATGTGGCCTTCAC 509877 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAA 451091 || || || | | | || | || || || | | | ||| | ||| |||| | Sbjct 509878 CGACTCTGAGCGCTTGATTGGAGATGCAGCCAAGAACCA-GGTGGCTATGAATCCCAAGA 509936 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 || | || | || || || ||| | || || ||| | || || | | || Sbjct 509937 ACTCGGTTTTCGACGCCAAGCGTCTTATCGGACGTCGCTTCGACGACCCAAAGATCCAGG 509996 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 |||| | || || ||| |||||| || | || ||||||||| | || | Sbjct 509997 AAGACATGAAGCACTGGCCTTTCCGTGTAGTCAACGATAACGGAAAGCCCAAGATGAGCG 510056 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | | | || ||||| || ||||| || || || || || ||||| |||| Sbjct 510057 TTGAGTTCAAGGGTGATGAGAAGCGCTTTGCGCCAGAGGAGATCAGCTCAATGGTGCTTA 510116 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTA 451331 | || ||||| |||||||||||| ||| | || ||||| || | || || || || | Sbjct 510117 CCAAGATGAAGGAAACAGCAGAAGCTTATTTGGGCTCTCCGGTCAAAGACGCCGTCATCA 510176 Query 451332 CTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTG 451391 | || ||||| || |||||||| | || || || || || || |||||||| |||| Sbjct 510177 CAGTGCCCGCATACTTCAATGACTCCCAGCGCCAGGCTACGAAGGATGCAGGCGCCATTG 510236 Query 451392 CTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGAC 451451 | ||| | || || ||||| || || || |||||||| || || || || || ||||||| Sbjct 510237 CAGGTCTTAACGTGCTTCGCATCATAAACGAACCTACGGCGGCAGCACTGGCCTATGGAC 510296 Query 451452 T 451452 | Sbjct 510297 T 510297 >seq4563 Length=5383265 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || |||||||| || ||| | || Sbjct 4507367 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCG 4507308 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 4507307 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 4507248 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | || | | || |||||| Sbjct 4507247 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAT 4507188 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || | || | ||||| || Sbjct 4507187 ATTCAGAAAGAGTCCACTTTGCACTTGGT 4507159 >seq4465 Length=1195914 Score = 100 bits (110), Expect = 1e-15 Identities = 268/405 (66%), Gaps = 6/405 (1%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| ||||| || || || ||||| ||||| ||||| ||||| ||||| || | | Sbjct 154589 AATCCCGATGAGGCAGTGGCTTATGGAGCTGCCGTTCAGGCAGCCATTCTC-CATGGCGA 154647 Query 452051 GATGATGAAAAATTAGGAG-ATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGT 452109 | | | | | || || | || || | ||||| || ||||||||||| || | Sbjct 154648 CAAGTCGGAGGCTGTCCAGGATCTCCTTCTACTGGATGTCACTCCTCTATCTCTAGGTAT 154707 Query 452110 TGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCT--ATTCCTTGT 452167 |||||| || || || ||||||||| | || || ||||||| | || || Sbjct 154708 TGAAACCGCCGGAGGGGTGATGACTACGCTGATCAA--GAGGAACACCACCATACCCACC 154765 Query 452168 AAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTG 452227 ||| | | ||||| |||| ||| || ||||| || |||||| || || ||| Sbjct 154766 AAACAAACTCAAATTTTTACCACATATGCGGACAACCAGCCGGGTGTACTCATCCAGGTG 154825 Query 452228 TTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA 452287 ||||||||||| || || ||||| | ||||| || | || || |||| || ||| Sbjct 154826 TTTGAAGGAGAGCGCGCGATGACTAGGGATAACAACAGCCTGGGTAAATTCGAACTATCA 154885 Query 452288 AACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCA 452347 ||||| ||| ||| | ||| ||||| | || | |||| |||| | || || Sbjct 154886 GCGATTCCCCCTGCTCCACGTGGAGTGCCTCAGGTGGAGGTGACCTTTGATATCGACGCG 154945 Query 452348 AATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAA 452392 ||||| || || ||||| | || | || || ||| | || ||| Sbjct 154946 AATGGCATACTCAATGTTACGGCTTTGGAGAAGTCAACCGGCAAA 154990 >seq4190 Length=303630 Score = 95.1 bits (104), Expect = 5e-14 Identities = 238/359 (66%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 || |||||||| ||||| || |||||||||| || ||||| ||||| || ||| Sbjct 36823 TTCGCTCCTGAGGAAATCTCCGCTATGGTTCTGGGCAAGATGAAGGAAACCGCTGAAGCC 36764 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| | || || || |||| || | || || || || || ||||| ||||| Sbjct 36763 TATTTGGGCAAGAAGGTCACCCATGCCGTCGTCACCGTGCCTGCCTACTTCAACGATGCC 36704 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || || || || || ||||| || |||||| ||| | | ||| | || || ||| Sbjct 36703 CAGCGTCAGGCTACCAAGGATGCTGGTGTTATTGCCGGTCTGCAGGTTATGCGTATCATT 36644 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 || ||||| || || |||||| | || || || || ||| || ||| || | || Sbjct 36643 AACGAACCCACTGCTGCTGCTATTGCTTACGGTCT-GGACAAG---AAGGAA--GGCGAG 36590 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 || || | | || || ||||| || || || || ||| || | || | || Sbjct 36589 AAGAACGTGCTGGTGTTCGATTTGGGCGGCGGTACCTTCGATGTCTCCCTTCTGACCATC 36530 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || | || || || || || ||| ||||| |||||||||||| | || ||||| || Sbjct 36529 GATAACGGAGTTTTCGAGGTGGTGGCCACCAACGGTGATACTCATTTGGGTGGTGAGGA 36471 >seq980 Length=21089 Score = 95.1 bits (104), Expect = 5e-14 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 ||||| || | ||||| |||||||||||||| || || || ||||| | Sbjct 3553 ATTTCCGCTTTCGTTCTGGGCAAAATGAAAGAAACCGCCGAGGCGTACCTTGGTGAAAAA 3612 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || | || || || || ||||| ||||| || || ||||| || || || || || Sbjct 3613 GTGACGCAGGCCGTGATCACGGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCGACC 3672 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 ||||||||||| | ||||||||| | | || || || || || || ||||| || || Sbjct 3673 AAAGATGCAGGCCGTATTGCTGGCCTTGAAGTCCTGCGTATCATCAACGAACCGACGGCC 3732 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAA 451459 ||||| || || ||||| | |||||| Sbjct 3733 GCTGCCCTTGCTTATGG-CATGGAAAA 3758 >seq4811 Length=1929942 Score = 86.0 bits (94), Expect = 2e-11 Identities = 199/297 (67%), Gaps = 20/297 (7%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || ||||| || || || || || |||||||| ||| |||||||| || || || ||| Sbjct 1155489 GACGCAGTGATCACAGTGCCGGCGTATTTCAACGATAGCCAACGGCAGGCTACCAAGGAT 1155430 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || ||| ||||| || || ||||| | | || ||||||||||| || || |||||| Sbjct 1155429 GCGGGATCCATTGCCGGATTGAATGTGTTGAGGATCATTAATGAACCCACTGCCGCTGCT 1155370 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAA----GaaaaaaaTATTTTAGTATT 451494 | || || ||| ||| | ||||| | ||| || ||| | | | || Sbjct 1155369 TTGGCCTACGGATTAG-------ATAAGAACCTGAAGGGGGAGCGCAATGTCCTCATCTT 1155317 Query 451495 TGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTT--CAATTGAAGATGGGGTA--- 451549 ||| | ||||| ||||| |||| ||| | ||| | || || || ||| || Sbjct 1155316 CGATCTGGGTGGCGGAACCTTTGAT--GTCTCCATTTTGACCATCGACGA-GGGTTACCT 1155260 Query 451550 -TTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || ||||| || |||||| ||||| | || ||||||||| |||| || Sbjct 1155259 TTTCGAGGTGAAGGCCACGGCTGGTGACACTCACTTGGGTGGTGAAGATTTTGACAA 1155203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975593197490168