Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4811 147 2e-29 seq4453 120 2e-21 seq4190 109 4e-18 seq980 102 6e-16 >seq4811 Length=1929942 Score = 147 bits (162), Expect = 2e-29 Identities = 276/403 (68%), Gaps = 7/403 (2%) Strand=Plus/Plus Query 517916 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGA--TTCAAAT 517973 || || | |||||| |||||||| | | || ||| ||| | || ||| || | || Sbjct 1155095 TTGGCCCTTTCACAGGCTGTCCTCAAACGTCTTAAAGCTCTGGC--ATTACCCTTGATAT 1155152 Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033 | | || | ||||||||||| || ||| || | | || || || || ||||||| Sbjct 1155153 CGGACTTGTGCTTTCTCTTGAACTCCTCAGCAAAGTGATTGACTAGTCGGTTGTCAAAAT 1155212 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTT 518090 ||||||| ||||| | ||| | || | ||| || | || | |||||| || || | Sbjct 1155213 CTTCACCACCCAAGTGAGTGTCACCAGCCGTGGCCTTCACCTCGAAAAGGTAACCCTCGT 1155272 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 | | | ||||| | |||||| |||||| ||||||| ||| || || || ||||| Sbjct 1155273 CGATGGTCAAAATGGAGACATCAAAGGTTCCGCCACCCAGATCGAAGATGAGGACATTGC 1155332 Query 518151 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 518210 || | |||| ||||| | || || || |||||||| ||||| |||||||||| Sbjct 1155333 GCTCCCCCTTCAGGTTCTTATCTAATCCGTAGGCCAAAGCAGCGGCAGTGGGTTCATTAA 1155392 Query 518211 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 518270 | || ||||| ||||| | || ||||| ||| ||||| || || || || | ||| Sbjct 1155393 TGATCCTCAACACATTCAATCCGGCAATGGATCCCGCATCCTTGGTAGCCTGCCGTTGGC 1155452 Query 518271 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC 518313 |||||| ||||| || || || || || || || || |||| Sbjct 1155453 TATCGTTGAAATACGCCGGCACTGTGATCACTGCGTCCTTTAC 1155495 >seq4453 Length=172547 Score = 120 bits (132), Expect = 2e-21 Identities = 549/866 (63%), Gaps = 6/866 (1%) Strand=Plus/Plus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 |||| | || || |||| ||| || | ||||| | | || || || || || || | Sbjct 158767 AATCGGTACCCTCAAACAGAGAGTCGATCTCAATGCTGGCCTGGGTGGAGGACGACAGGG 158826 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 517968 ||| || ||||| || || || || | || | || | ||| ||| ||| | | Sbjct 158827 TACGCTTTGCACGCTCGCAGGCGGTGCGCAGACGACGCAGGGCAC--GCTTGTTGGTGGT 158884 Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028 |||||| | || | || | |||||| || | || | || |||||||| || || Sbjct 158885 CAAATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACGAAGTGCGTAACAAGACGGTTGTC 158944 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||| || ||||| ||||| | || | ||| | || | | || | || | || || Sbjct 158945 AAAGTCCTCACCACCCAAATGCGTGTCTCCGGCAGTGGACTTAACCTCAAAGATACCGTC 159004 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 || | |||| | | ||||| ||| || || |||| ||| || || || || || Sbjct 159005 ATCGATCGACAGGATGGACACATCGAAGGTACCGCCGCCCAGATCGAAGATGAGCACGTT 159064 Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 ||| | || || || | ||| || |||| |||||| || || || || || Sbjct 159065 GCGCTCTCCAACAGCCTTCTTGTCCAAACCGTATGCAATAGCAGCGGCCGTGGGCTCGTT 159124 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 || || | || || || |||||||| || |||| ||||| || || || || | || Sbjct 159125 GATGATACGCAGCACGTTCAGACCAGCGATGGTTCCGGCATCCTTGGTCGCCTGACGCTG 159184 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 || ||||| || || || || || || || || || | || || || || | || Sbjct 159185 AGAGTCGTTGAAGTAGGCTGGCACGGTGATGACAGCGTTGGTCACAGTCTTGCCCAGGTA 159244 Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388 || || || | ||||| || | | | ||| || || |||| || |||||| | Sbjct 159245 GGCCTCAGCGGTCTCCTTCATCTTGGTGAGCACCATCGAGGAGATTTCCTC-GGGGAAGA 159303 Query 518389 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 518447 | ||| || | | || | || |||| | || || || | | | | Sbjct 159304 AGGTCTTCTTCTCGTCCTTGTAGGTCACCTCAATCTTGGGCTTGCCGTCAGCGCTGACCA 159363 Query 518448 CTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 518507 | | || ||||||| ||||| || || || ||| || | || | | ||||| Sbjct 159364 CCTCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCGGAATCGTCGAACTTGCGACCAA 159423 Query 518508 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTG 518567 | | || || || || || || || | ||| || || || || | || | ||||| | Sbjct 159424 TCAGGCGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGG 159483 Query 518568 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 518627 ||||||| |||||| | || || || || || | |||||| |||||||| || ||||||| Sbjct 159484 CATCTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGATTAC 159543 Query 518628 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687 | || || || || || || || || || |||| || | || || || || | | Sbjct 159544 CCTGGTCGTTGGCGATGATCTCGACCTTTCCATGCTGGAACACTCCCACGCACGAGTAGG 159603 Query 518688 TTGTTCCTAAATCAATACCAATAGCA 518713 | || || ||||||||||||| |||| Sbjct 159604 TGGTGCCCAAATCAATACCAACAGCA 159629 >seq4190 Length=303630 Score = 109 bits (120), Expect = 4e-18 Identities = 242/360 (67%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 518017 AAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTG 518076 || ||| | ||| || || ||||| ||||| | ||||| || || || || | Sbjct 36455 AACACGCTGATCGAAGTCCTCACCACCCAAATGAGTATCACCGTTGGTGGCCACCACCTC 36514 Query 518077 GAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAA 518136 ||||| ||| | || | | || ||| | ||||| ||| || || |||| ||| || Sbjct 36515 GAAAACTCCGTTATCGATGGTCAGAAGGGAGACATCGAAGGTACCGCCGCCCAAATCGAA 36574 Query 518137 AATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGC 518196 | || || ||| | || | ||| || || || ||||| || |||| ||||||||| Sbjct 36575 CACCAGCACGTTCTTCTC---GCCTTCCTTCTTGTCCAGACCGTAAGCAATAGCAGCAGC 36631 Query 518197 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 518256 ||| ||||| ||||| || | || ||| | ||||| ||||| || ||||| || || Sbjct 36632 AGTGGGTTCGTTAATGATACGCATAACCTGCAGACCGGCAATAACACCAGCATCCTTGGT 36691 Query 518257 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTT 518315 || || | || | |||||| || || ||||| || || | ||||||| || | ||| Sbjct 36692 AGCCTGACGCTGGGCATCGTTGAAGTAGGCAGGCACGGTGACGACGGCATGGGTGACCTT 36751 Query 518316 CTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 518375 ||| |||| ||| || || |||| ||||| || | | || ||| | || |||| Sbjct 36752 CTTGCCCAA-ATAGGCTTCAGCGGTTTCCTTCATCTTGCCCAGAACCATAGCGGAGATTT 36810 >seq980 Length=21089 Score = 102 bits (112), Expect = 6e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| ||||| || || ||||| || || || | || || | ||| |||||| Sbjct 3749 CCATAAGCAAGGGCAGCGGCCGTCGGTTCGTTGATGATACGCAGGACTTCAAGGCCAGCA 3690 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | ||||||||||| || || || | || | ||||||||| || || ||||| || Sbjct 3689 ATACGGCCTGCATCTTTGGTCGCCTGACGCTGGGCATCGTTAAAGTAAGCCGGAACCGTG 3630 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 || ||||| | || |||| || ||||| || || || |||| ||||||||| Sbjct 3629 ATCACGGCCTGCGTCACTTTTTCACCAAGGTACGCCTCGGCGGTTTCTTTCATTTT 3574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780576963187876