Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4563 140 4e-28 seq3469 136 5e-27 >seq4563 Length=5383265 Score = 140 bits (154), Expect = 4e-28 Identities = 487/757 (64%), Gaps = 10/757 (1%) Strand=Plus/Minus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 ||||| || |||| || | |||||||| |||| || | |||||||||| ||| || Sbjct 4594251 AGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAAATTG 4594192 Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || | || | | || ||||||||| ||||| | | |||||||| | Sbjct 4594191 GACTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATTTCTG 4594132 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 || || ||||| |||| ||| | ||||| | | ||||| | || || ||| || Sbjct 4594131 GTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTATGTCTTT---TCCGGTGTG 4594075 Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331 ||| | || |||||||| || || | || || || | | |||| || | || | Sbjct 4594074 ACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGAG 4594015 Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 || || | |||||| || |||||||| | |||||| || | |||| ||| || Sbjct 4594014 TACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTTA 4593955 Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451 || |||||| |||||||| ||||||| || || | ||||||||| |||| Sbjct 4593954 CTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGCT 4593895 Query 110452 TTGAGAATGGCCTTCCATAC--ATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCT 110509 | | |||||| ||||| || | || || ||| ||| || | || || | Sbjct 4593894 TCAATAATGGCGAACCATAAGGATTGA--GCCTTAACTGTTCGGTTGGCACGGCCCTCTT 4593837 Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCG 110569 ||| || || || || | |||||||| | || | ||||| ||| || Sbjct 4593836 GCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGGC 4593777 Query 110570 CCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629 |||| || || | |||||||||| |||| |||| || | |||||||| || | Sbjct 4593776 ATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGAT 4593717 Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689 |||| ||||||| || | ||||| || ||| ||| |||||| | || ||| Sbjct 4593716 CAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTTTT 4593657 Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749 || |||| ||| || | || ||| |||||||| || || || || | ||| | || Sbjct 4593656 TCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAAGG 4593597 Query 110750 ATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806 ||| ||| | || |||| | ||||| || || | |||||||||||| | Sbjct 4593596 CTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGACCCTCA 4593537 Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACC 110843 |||| |||| | ||||| ||| |||||||| || Sbjct 4593536 GCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTCC 4593500 >seq3469 Length=8968 Score = 136 bits (150), Expect = 5e-27 Identities = 344/512 (67%), Gaps = 22/512 (4%) Strand=Plus/Plus Query 11490 CACCTGAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGAC 11549 |||| || || || || ||||| || || || || ||||| || || | || Sbjct 1147 CACCACAACCTGCCGGTCAAAACGGCCGGGACGCAGCAGAGCCGGGTCCAGCACGTCCGG 1206 Query 11550 ACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTC 11606 |||||| || |||||||| | | | ||| ||||||| || || ||||||||||| Sbjct 1207 ACGGTTGGTGGCGGCAATCAGGATCACGCC---CTCATTGCTTTCAAACCCGTCCATTTC 1263 Query 11607 TGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG--GGCATACCACCTGCC 11664 || | |||||| | |||||| ||||||||||| || | | || | | ||| Sbjct 1264 GACCAGCATCTGGTTCAGCGTCTGCTCACGCTCATCATTCCCGCCGCCAAGGCCCGCGCC 1323 Query 11665 GAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCA 11724 ||| | | || || |||||||| || || ||||| | ||| ||||| | | | Sbjct 1324 --ACGATGCCGGCCCACGGCGTCAATTTCGTCAATGAAGATGATGCACGGCGCG--GCCT 1379 Query 11725 -CGTGCC-TGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAA 11782 | |||| || ||||| | ||||| || || ||| |||||||| || ||||| || | Sbjct 1380 TCTTGCCCTGCTCGAACATGTCACGCACGCGGGACGCACCAACACCGACAAACATTTCCA 1439 Query 11783 CGAAGTTTGCGGCAGAACAC-TGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGA 11841 | |||| | | ||| |||| ||| || ||||| | |||||| || ||||| || Sbjct 1440 CAAAGTCAGACCCGGAAATGGTGAA-GAACGGCACATTGGCCTCACCCGCAATGGCACGC 1498 Query 11842 GCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTG 11901 || || || ||||||||||| || || | || | || ||| |||| |||||| ||| Sbjct 1499 GCCAGCAGGGTCTTACCCGTGCCCGGAGGTCCGACCAGCAGGACGCCCTTGGGGATTTTG 1558 Query 11902 GCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGT 11958 |||| || ||| | || || | || |||||||| ||||| |||| |||| Sbjct 1559 CCACCCAGACGGGTAAATT---TCTGCGGGTCTTTCAGGAAGTCGACAATTTCCTGAAGT 1615 Query 11959 TCCTCCTTGGCGGAGTCGATACCCTCAACATC 11990 || ||||||| || |||||| |||| || Sbjct 1616 TCACCCTTGGCTTCATCAATACCCGCAACGTC 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588939586558800